Literature DB >> 25990728

Eukaryotic translation initiation factor eIF5 promotes the accuracy of start codon recognition by regulating Pi release and conformational transitions of the preinitiation complex.

Adesh K Saini, Jagpreet S Nanda, Pilar Martin-Marcos, Jinsheng Dong, Fan Zhang, Monika Bhardwaj, Jon R Lorsch, Alan G Hinnebusch.   

Abstract

Entities:  

Year:  2015        PMID: 25990728      PMCID: PMC4477677          DOI: 10.1093/nar/gkv510

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


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Nucleic Acids Res. 2014, 42, 9623–40. doi: 10.1093/nar/gku653 The authors wish to make the following corrections to their article. The results and conclusion of the article are not affected and remain valid. The authors apologise to the readers for the inconvenience caused. In Figure 2A, row 4 (labelled G31R,M18V), the double mutant does not grow on -His medium in the presence of TIF5. Thus, it confers a dominant Ssu- phenotype.
Figure 2.

Genetic characterization of intragenic suppressors of TIF5 allele SUI5/G31R. (A) Derivatives of his4-301 tif5Δ strain ASY100 harboring a TIF5 plasmid and the indicated TIF5-FL alleles on LEU2 plasmids (hc WT on pAS5-132, sc WT on pAS5-101, G31R on pAS5-111, G31R,M18V on pAS5-115, G31R,K33E on pAS5-117, G31R,G62S on pAS5-112, G31R,L61A on pAS5-116 and hc G31R,T34N on pAS5-136) were replica-plated to SC-LU supplemented with either 0.3 mM histidine (-LU) or 0.0003 mM histidine (-LUH), or to SC-L supplemented with 5.2 mM 5-FOA (5-FOA). Cells were incubated for 3d (-LU) or 6d (-LUH and 5-FOA) at 30°C. (B) 10-fold serial dilutions of strains described in (A) were spotted on SC-LU and incubated for 3d at 30°C. (C) Derivatives of tif5Δ strain ASY137 harboring a TIF5 plasmid and the indicated TIF5 alleles on LEU2 plasmids were transformed with HIS4-lacZ reporter plasmids with AUG (p367) or UUG (p391) start codons. Cells were cultured in SC lacking leucine, tryptophan and uracil at 30°C and β-galactosidase activities were measured in whole cell extracts (WCEs). Ratios of β-galactosidase expressed from the UUG to AUG reporter were calculated from three independent transformants and mean ratios and and S.E.M.s (error bars) were plotted. (D) Slg− and His+/Sui− phenotypes of the his4-301 tif5Δ strains harboring TIF5 alleles described in (A), and isogenic strains containing M18V on pAS5-106, K33E on pAS5-108, G62S on pAS5-103, L61A on pAS5-107 or hc T34N on pAS5-135, were determined by spotting serial 10-fold dilutions on SC-LU supplemented with 0.3 mM His (+His) or 0.0003 mM His (−His) and incubated for 3d (−His) or 6d (+His) at 30°C. (E) Derivatives of his4-301 sui1Δ strain ASY250 with the chromosomal TIF5 gene under the GAL1 promoter (P) harboring SUI1+ on a TRP1 plasmid and the indicated TIF5 alleles on LEU2 plasmids were transformed with the AUG or UUG HIS4-lacZ reporter plasmids. Transformants were cultured in synthetic minimal medium with 2% galactose as carbon source and supplemented with 0.3 mM histidine (SGal+H) and then shifted to synthetic minimal medium with 2% glucose (SD+H) for 16 h. UUG:AUG initiation ratios for the HIS4-lacZ reporters were determined as in (C). (F) HIS4-lacZ UUG:AUG initiation ratios were measured as in (C) for strains described in (D) harboring the indicated plasmid-borne TIF5 alleles. For panels A and D, images have been cropped from results obtained from different plates examined in parallel in the same experiments.

Genetic characterization of intragenic suppressors of TIF5 allele SUI5/G31R. (A) Derivatives of his4-301 tif5Δ strain ASY100 harboring a TIF5 plasmid and the indicated TIF5-FL alleles on LEU2 plasmids (hc WT on pAS5-132, sc WT on pAS5-101, G31R on pAS5-111, G31R,M18V on pAS5-115, G31R,K33E on pAS5-117, G31R,G62S on pAS5-112, G31R,L61A on pAS5-116 and hc G31R,T34N on pAS5-136) were replica-plated to SC-LU supplemented with either 0.3 mM histidine (-LU) or 0.0003 mM histidine (-LUH), or to SC-L supplemented with 5.2 mM 5-FOA (5-FOA). Cells were incubated for 3d (-LU) or 6d (-LUH and 5-FOA) at 30°C. (B) 10-fold serial dilutions of strains described in (A) were spotted on SC-LU and incubated for 3d at 30°C. (C) Derivatives of tif5Δ strain ASY137 harboring a TIF5 plasmid and the indicated TIF5 alleles on LEU2 plasmids were transformed with HIS4-lacZ reporter plasmids with AUG (p367) or UUG (p391) start codons. Cells were cultured in SC lacking leucine, tryptophan and uracil at 30°C and β-galactosidase activities were measured in whole cell extracts (WCEs). Ratios of β-galactosidase expressed from the UUG to AUG reporter were calculated from three independent transformants and mean ratios and and S.E.M.s (error bars) were plotted. (D) Slg− and His+/Sui− phenotypes of the his4-301 tif5Δ strains harboring TIF5 alleles described in (A), and isogenic strains containing M18V on pAS5-106, K33E on pAS5-108, G62S on pAS5-103, L61A on pAS5-107 or hc T34N on pAS5-135, were determined by spotting serial 10-fold dilutions on SC-LU supplemented with 0.3 mM His (+His) or 0.0003 mM His (−His) and incubated for 3d (−His) or 6d (+His) at 30°C. (E) Derivatives of his4-301 sui1Δ strain ASY250 with the chromosomal TIF5 gene under the GAL1 promoter (P) harboring SUI1+ on a TRP1 plasmid and the indicated TIF5 alleles on LEU2 plasmids were transformed with the AUG or UUG HIS4-lacZ reporter plasmids. Transformants were cultured in synthetic minimal medium with 2% galactose as carbon source and supplemented with 0.3 mM histidine (SGal+H) and then shifted to synthetic minimal medium with 2% glucose (SD+H) for 16 h. UUG:AUG initiation ratios for the HIS4-lacZ reporters were determined as in (C). (F) HIS4-lacZ UUG:AUG initiation ratios were measured as in (C) for strains described in (D) harboring the indicated plasmid-borne TIF5 alleles. For panels A and D, images have been cropped from results obtained from different plates examined in parallel in the same experiments.
  1 in total

1.  A curious case of cysteines in human peroxiredoxin I.

Authors:  Ashu Mohammad; Reena V Saini; Rakesh Kumar; Deepak Sharma; Neeraj K Saini; Arpit Gupta; Priyanka Thakur; Christine C Winterbourn; Adesh K Saini
Journal:  Redox Biol       Date:  2020-09-24       Impact factor: 11.799

  1 in total

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