Literature DB >> 25987712

Species delimitation in plants using the Qinghai-Tibet Plateau endemic Orinus (Poaceae: Tridentinae) as an example.

Xu Su1, Guili Wu2, Lili Li2, Jianquan Liu3.   

Abstract

BACKGROUND AND AIMS: Accurate identification of species is essential for the majority of biological studies. However, defining species objectively and consistently remains a challenge, especially for plants distributed in remote regions where there is often a lack of sufficient previous specimens. In this study, multiple approaches and lines of evidence were used to determine species boundaries for plants occurring in the Qinghai-Tibet Plateau, using the genus Orinus (Poaceae) as a model system for an integrative approach to delimiting species.
METHODS: A total of 786 individuals from 102 populations of six previously recognized species were collected for niche, morphological and genetic analyses. Three plastid DNA regions (matK, rbcL and trnH-psbA) and one nuclear DNA region [internal transcribed space (ITS)] were sequenced. KEY
RESULTS: Whereas six species had been previously recognized, statistical analyses based on character variation, molecular data and niche differentiation identified only two well-delimited clusters, together with a third possibly originating from relatively recent hybridization between, or historical introgression from, the other two.
CONCLUSIONS: Based on a principle of integrative species delimitation to reconcile different sources of data, the results provide compelling evidence that the six previously recognized species of the genus Orinus that were examined should be reduced to two, with new circumscriptions, and a third, identified in this study, should be described as a new species. This empirical study highlights the value of applying genetic differentiation, morphometric statistics and ecological niche modelling in an integrative approach to re-circumscribing species boundaries. The results produce relatively objective, operational and unbiased taxonomic classifications of plants occurring in remote regions.
© The Author 2015. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  Orinus; PCoA; Poaceae; Qinghai–Tibet Plateau; genetic gaps; niche differentiation; principal co-ordinate analysis; species delimitation

Mesh:

Substances:

Year:  2015        PMID: 25987712      PMCID: PMC4479750          DOI: 10.1093/aob/mcv062

Source DB:  PubMed          Journal:  Ann Bot        ISSN: 0305-7364            Impact factor:   4.357


  54 in total

1.  Molecular phylogeny and biogeography of the Qinghai-Tibet Plateau endemic Nannoglottis (Asteraceae).

Authors:  Jian-Quan Liu; Tian-Gang Gao; Zhi-Duan Chen; An-Ming Lu
Journal:  Mol Phylogenet Evol       Date:  2002-06       Impact factor: 4.286

Review 2.  Ribosomal ITS sequences and plant phylogenetic inference.

Authors:  I Alvarez; J F Wendel
Journal:  Mol Phylogenet Evol       Date:  2003-12       Impact factor: 4.286

3.  Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae).

Authors:  T Sang; D Crawford; T Stuessy
Journal:  Am J Bot       Date:  1997-08       Impact factor: 3.844

4.  Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences.

Authors:  Philippe Cuénoud; Vincent Savolainen; Lars W Chatrou; Martyn Powell; Renée J Grayer; Mark W Chase
Journal:  Am J Bot       Date:  2002-01       Impact factor: 3.844

5.  A species definition for the modern synthesis.

Authors:  J Mallet
Journal:  Trends Ecol Evol       Date:  1995-07       Impact factor: 17.712

6.  Selecting barcoding loci for plants: evaluation of seven candidate loci with species-level sampling in three divergent groups of land plants.

Authors:  Michelle L Hollingsworth; Alex Andra Clark; Laura L Forrest; James Richardson; R Toby Pennington; David G Long; Robyn Cowan; Mark W Chase; Myriam Gaudeul; Peter M Hollingsworth
Journal:  Mol Ecol Resour       Date:  2009-01-31       Impact factor: 7.090

7.  Phylogenetic and coalescent strategies of species delimitation in snubnose darters (Percidae: Etheostoma).

Authors:  Richard C Harrington; Thomas J Near
Journal:  Syst Biol       Date:  2011-08-09       Impact factor: 15.683

8.  Species delimitation using a combined coalescent and information-theoretic approach: an example from North American Myotis bats.

Authors:  Bryan C Carstens; Tanya A Dewey
Journal:  Syst Biol       Date:  2010-05-24       Impact factor: 15.683

9.  Morphological and molecular evidence reveals recent hybridization between gorilla taxa.

Authors:  Rebecca Rogers Ackermann; Jacqueline M Bishop
Journal:  Evolution       Date:  2009-10-05       Impact factor: 3.694

10.  Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species.

Authors:  Shilin Chen; Hui Yao; Jianping Han; Chang Liu; Jingyuan Song; Linchun Shi; Yingjie Zhu; Xinye Ma; Ting Gao; Xiaohui Pang; Kun Luo; Ying Li; Xiwen Li; Xiaocheng Jia; Yulin Lin; Christine Leon
Journal:  PLoS One       Date:  2010-01-07       Impact factor: 3.240

View more
  20 in total

1.  Molecular and morphological analyses clarify species delimitation in section Costatae and reveal Betula buggsii sp. nov. (sect. Costatae, Betulaceae) in China.

Authors:  Luwei Wang; Junyi Ding; James S Borrell; Martin Cheek; Hugh A McAllister; Feifei Wang; Lu Liu; Huayu Zhang; Qiufeng Zhang; Yiming Wang; Nian Wang
Journal:  Ann Bot       Date:  2022-03-23       Impact factor: 4.357

2.  Multiple lines of evidence supports the two varieties of Halenia elliptica (Gentianaceae) as two species.

Authors:  Jin-Feng Wu; Dong-Rui Jia; Rui-Juan Liu; Zhi-Li Zhou; Lin-Lin Wang; Min-Yu Chen; Li-Hua Meng; Yuan-Wen Duan
Journal:  Plant Divers       Date:  2021-09-23

3.  Phylogenetic and morphological analyses of Pilosocereus leucocephalus group s.s. (Cactaceae) reveal new taxonomical implications.

Authors:  Daniel Franco-Estrada; Duniel Barrios; Cristian R Cervantes; Xochitl Granados-Aguilar; Salvador Arias
Journal:  J Plant Res       Date:  2022-03-19       Impact factor: 3.000

4.  DNA-Based Taxonomy in Ecologically Versatile Microalgae: A Re-Evaluation of the Species Concept within the Coccoid Green Algal Genus Coccomyxa (Trebouxiophyceae, Chlorophyta).

Authors:  Veronica Malavasi; Pavel Škaloud; Fabio Rindi; Sabrina Tempesta; Michela Paoletti; Marcella Pasqualetti
Journal:  PLoS One       Date:  2016-03-30       Impact factor: 3.240

5.  Species Delimitation of the Cycas segmentifida Complex (Cycadaceae) Resolved by Phylogenetic and Distance Analyses of Molecular Data.

Authors:  Xiuyan Feng; Jian Liu; Xun Gong
Journal:  Front Plant Sci       Date:  2016-02-15       Impact factor: 5.753

6.  Development of SSR markers from transcriptomes for Orinus (Poaceae), an endemic of the Qinghai-Tibetan Plateau.

Authors:  Yu-Ping Liu; Xu Su; Wen-Chun Luo; Ting Lv; Ke-Long Chen; A J Harris; Sayed Afzal Shah
Journal:  Appl Plant Sci       Date:  2017-07-19       Impact factor: 1.936

7.  Eutrema giganteum (Brassicaceae), a new species from Sichuan, southwest China.

Authors:  Guoqian Hao; Changbing Zhang; Ihsan A Al-Shehbaz; Xinyi Guo; Hao Bi; Junyin Wang; Jianquan Liu
Journal:  PhytoKeys       Date:  2017-06-29       Impact factor: 1.635

8.  Species delimitation and hybridization history of a hazel species complex.

Authors:  Zhiqiang Lu; Yongshuai Sun; Ying Li; Yongzhi Yang; Gaini Wang; Jianquan Liu
Journal:  Ann Bot       Date:  2021-06-24       Impact factor: 4.357

9.  Gene Flow Results in High Genetic Similarity between Sibiraea (Rosaceae) Species in the Qinghai-Tibetan Plateau.

Authors:  Peng-Cheng Fu; Qing-Bo Gao; Fa-Qi Zhang; Rui Xing; Jiu-Li Wang; Hai-Rui Liu; Shi-Long Chen
Journal:  Front Plant Sci       Date:  2016-10-25       Impact factor: 5.753

10.  Species delimitation of Chinese hop-hornbeams based on molecular and morphological evidence.

Authors:  Zhiqiang Lu; Dan Zhang; Siyu Liu; Xiaoyue Yang; Xue Liu; Jianquan Liu
Journal:  Ecol Evol       Date:  2016-06-13       Impact factor: 2.912

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.