| Literature DB >> 25986875 |
A Bal1, I Schuffenecker1, J-S Casalegno1, L Josset1, M Valette1, N Armand2, P B Dhondt3, V Escuret1, B Lina4.
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Year: 2015 PMID: 25986875 PMCID: PMC7129224 DOI: 10.1016/j.cmi.2015.05.008
Source DB: PubMed Journal: Clin Microbiol Infect ISSN: 1198-743X Impact factor: 8.067
Fig. 1Phylogenetic analysis based on complete VP1 coding sequences of enterovirus D68 (EV-D68) strains. The analysis included the two sequences determined from the respiratory specimens collected from the patients of this study (shown by a dot), eight selected sequences from clinical strains and belonging to genogroups A, B and C (as defined by Tokarz et al. in 2012 [4]), and the prototype EV-D68 strain. The prototype coxsackievirus EV-D94 strain was used as an outgroup virus. Genetic distances were calculated with the Tamura–Nei model of evolution. The tree was constructed by the neighbour-joining method using MEGA5 and validated using 1000 bootstrap pseudo-replicates. Designation of strains is as follows: serotype of the strain–GenBank accession number–laboratory number of the isolate–three-letter country ISO code–year of detection. The 1DVP1 sequences determined in this study were deposited in GenBank database (KP307989–KP307992).