| Literature DB >> 25986246 |
Tomasz Maciej Stępkowski1, Iwona Wasyk2, Agnieszka Grzelak3, Marcin Kruszewski2,4,5.
Abstract
LUHMES cells, a recently established line of immortalized embryonic mesencephalic cells, are the novel in vitro model for studying Parkinson's disease (PD) and dopaminergic neuron biology. Phosphoglyceromutase 5 (PGAM5) is a mitochondrial protein involved in mitophagy, mitochondria dynamics, and other processes important for PD pathogenesis. We tested the impact of lentiviral overexpression of PGAM5 protein in LUHMES cells on their differentiation and expression of 84 PD-related genes. LUHMES cells were transduced with PGAM5 or mock and treated with 100 μM 6-hydroxydopamine (6-OHDA), a model PD neurotoxin. Real-Time PCR analysis revealed that the treatment with 6-OHDA-induced changes in expression of 44 PD-related genes. PGAM5 transduction alone did not cause alternations in PD-related genes expression, nor it affected changes in gene expression mediated by 6-OHDA. The 6-OHDA-induced PD-related gene expression profile of LUHMES cells is presented for the first time and widely discussed.Entities:
Keywords: 6-hydroxydopamine; Gene expression; LUHMES cells; PGAM5; Parkinson’s disease
Mesh:
Substances:
Year: 2015 PMID: 25986246 PMCID: PMC4602069 DOI: 10.1007/s10571-015-0207-5
Source DB: PubMed Journal: Cell Mol Neurobiol ISSN: 0272-4340 Impact factor: 5.046
Fig. 1The morphology of differentiated LUHMES cells. Lipofilic dye DiL was used to visualize the neurites. Nuclei were stained with Hoechst dye and cell bodies were observed in bright field with Hoffman modulation contrast. All pictures were taken at ×40 magnitude
Fig. 2PGAM5 expression in lentivirally transduced LUHMES cells. a The abundance of PGAM5_L protein was analyzed by Western Blot. b The overexpression of PGAM5_L mRNA was quantified in Real-Time PCR. Error bars represent SD of fold change calculated from three independent experiments
Fig. 3LUHMES cells morphology during differentiation is not influenced by PGAM5 transduction. Pictures of LUHMES cells, mock or PGAM5_L transduced, were taken in ×20 magnitude in Hoffman modulation contrast at third, fifth and seventh day of differentiation. Same cells were analyzed for red fluorescence of DsRed2 (the marker of transduction)
PD-related genes expression fold change in the LUHMES cells treated with 100 μM 6-OHDA
| Gene name | Gene symbol | Aliases | Student`s | Fold regulation |
|---|---|---|---|---|
|
|
|
|
|
|
| Adenomatous polyposis coli |
|
|
|
|
| Phosphatase and tensin homolog |
|
|
|
|
| N-ethylmaleimide-sensitive factor |
|
|
|
|
| Cell division cycle 27 homolog (S. cerevisiae) |
|
|
|
|
| Cell division cycle 42 (GTP binding protein, 25 kDa) |
|
|
|
|
| Ubiquitin-like modifier activating enzyme 1 |
|
|
|
|
| Cullin 2 |
| – |
|
|
| Optic atrophy 1 (autosomal dominant) |
|
|
|
|
| Actin, beta |
|
|
|
|
|
|
|
|
|
|
| PTEN-induced putative kinase 1 |
|
|
|
|
| Amyloid beta (A4) precursor protein |
|
|
|
|
| Reticulon 1 |
|
|
|
|
|
|
|
|
|
|
| Heat shock 70 kDa protein 4 |
|
|
|
|
| G protein-coupled receptor 37 (endothelin receptor type B-like) |
|
|
|
|
| Ca ++-dependent secretion activator |
|
|
|
|
| Caspase 3, apoptosis-related cysteine peptidase |
|
|
|
|
| Voltage-dependent anion channel 3 |
|
|
|
|
| Parkinson protein 2, E3 ubiquitin protein ligase (parkin) |
|
|
|
|
| S-phase kinase-associated protein 1 |
|
|
|
|
| Synaptotagmin I |
|
|
|
|
| Parkinson protein 7 |
|
|
|
|
| Ataxin 3 |
|
|
|
|
| Glucan (1,4-alpha-), branching enzyme 1 |
|
|
|
|
| F-box protein 9 |
|
|
|
|
|
|
|
|
|
|
| Synuclein, alpha (non A4 component of amyloid precursor) |
|
|
|
|
| Synaptic vesicle glycoprotein 2B |
|
|
|
|
|
|
|
|
|
|
| Delta-like 1 homolog (Drosophila) |
|
|
|
|
| Regulator of G-protein signaling 4 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Potassium inwardly-rectifying channel, subfamily J, member 6 |
|
|
|
|
|
|
|
|
|
|
| Dopa decarboxylase (aromatic L-amino acid decarboxylase) |
|
|
|
|
|
|
|
|
|
|
| Neurofilament, light polypeptide |
|
|
|
|
| Transcription factor 7-like 2 (T cell specific, HMG-box) |
|
|
|
|
| Solute carrier family 18 (vesicular monoamine), member 2 |
|
|
|
|
Over expressed gene names are highlighted in italic font. Statistical differences were examined by Student’s t test with p < 0.02 considered to be statistically significant. Only statistically significant gene expression changes higher than 20 % are shown. The p values and fold regulation levels were calculated from six experiments
The functional groups of PD-related genes and their expression regulation in response to 6-OHDA
| Functional gene group | Genes belonging to the group and their expression regulation in response to 6-OHDA |
|---|---|
| Parkin complex |
|
| Parkin Substrate |
|
| Cell adhesion |
|
| Ubiquitination |
|
| Inflammation |
|
| Apoptosis |
|
| Mitochondria |
|
| Synaptic Vesicles |
|
| Signal Transduction | Dopaminergic: |
| GABAergic: | |
| Notch: | |
| Cytoskeletal organization |
|
| Ion transport |
|
| Transporters |
|
| Others |
|
Up-regulated genes shown in bold. Down-regulated genes shown in undeline. Tested genes whose expression was not changed are highlighted in italic