Literature DB >> 25985756

Building biological foundries for next-generation synthetic biology.

Ran Chao1, YongBo Yuan, HuiMin Zhao.   

Abstract

Synthetic biology is an interdisciplinary field that takes top-down approaches to understand and engineer biological systems through design-build-test cycles. A number of advances in this relatively young field have greatly accelerated such engineering cycles. Specifically, various innovative tools were developed for in silico biosystems design, DNA de novo synthesis and assembly, construct verification, as well as metabolite analysis, which have laid a solid foundation for building biological foundries for rapid prototyping of improved or novel biosystems. This review summarizes the state-of-the-art technologies for synthetic biology and discusses the challenges to establish such biological foundries.

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Year:  2015        PMID: 25985756     DOI: 10.1007/s11427-015-4866-8

Source DB:  PubMed          Journal:  Sci China Life Sci        ISSN: 1674-7305            Impact factor:   6.038


  7 in total

Review 1.  Accelerated genome engineering through multiplexing.

Authors:  Zehua Bao; Ryan E Cobb; Huimin Zhao
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2015-09-22

Review 2.  Engineering biological systems using automated biofoundries.

Authors:  Ran Chao; Shekhar Mishra; Tong Si; Huimin Zhao
Journal:  Metab Eng       Date:  2017-06-07       Impact factor: 9.783

Review 3.  Mapping the patent landscape of synthetic biology for fine chemical production pathways.

Authors:  Pablo Carbonell; Abdullah Gök; Philip Shapira; Jean-Loup Faulon
Journal:  Microb Biotechnol       Date:  2016-08-03       Impact factor: 5.813

4.  Towards a fully automated algorithm driven platform for biosystems design.

Authors:  Mohammad HamediRad; Ran Chao; Scott Weisberg; Jiazhang Lian; Saurabh Sinha; Huimin Zhao
Journal:  Nat Commun       Date:  2019-11-13       Impact factor: 14.919

5.  A scalable platform to discover antimicrobials of ribosomal origin.

Authors:  Richard S Ayikpoe; Chengyou Shi; Alexander J Battiste; Sara M Eslami; Sangeetha Ramesh; Max A Simon; Ian R Bothwell; Hyunji Lee; Andrew J Rice; Hengqian Ren; Qiqi Tian; Lonnie A Harris; Raymond Sarksian; Lingyang Zhu; Autumn M Frerk; Timothy W Precord; Wilfred A van der Donk; Douglas A Mitchell; Huimin Zhao
Journal:  Nat Commun       Date:  2022-10-17       Impact factor: 17.694

Review 6.  Bioinformatics for the synthetic biology of natural products: integrating across the Design-Build-Test cycle.

Authors:  Pablo Carbonell; Andrew Currin; Adrian J Jervis; Nicholas J W Rattray; Neil Swainston; Cunyu Yan; Eriko Takano; Rainer Breitling
Journal:  Nat Prod Rep       Date:  2016-05-17       Impact factor: 13.423

7.  From Escherichia coli mutant 13C labeling data to a core kinetic model: A kinetic model parameterization pipeline.

Authors:  Charles J Foster; Saratram Gopalakrishnan; Maciek R Antoniewicz; Costas D Maranas
Journal:  PLoS Comput Biol       Date:  2019-09-10       Impact factor: 4.475

  7 in total

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