Literature DB >> 25984422

Quantitative mass spectrometry of urinary biomarkers.

Marina Jerebtsova1, Sergei Nekhai2.   

Abstract

The effectiveness of treatment of renal diseases is limited because the lack of diagnostic, prognostic and therapeutic markers. Despite the more than a decade of intensive investigation of urinary biomarkers, no new clinical biomarkers were approved. This is in part because the early expectations toward proteomics in biomarkers discovery were significantly higher than the capability of technology at the time. However, during the last decade, proteomic technology has made dramatic progress in both the hardware and software methods. In this review we are discussing modern quantitative methods of mass-spectrometry and providing several examples of their applications for discovery and validation of renal disease biomarkers. We are optimistic about future prospects for the development of novel of specific clinical urinary biomarkers.

Entities:  

Keywords:  proteomics; quantitative mass-spectrometry; renal disease; urinary biomarkers

Year:  2014        PMID: 25984422      PMCID: PMC4429296          DOI: 10.5584/jiomics.v4i2.177

Source DB:  PubMed          Journal:  J Integr OMICS


  107 in total

1.  A stable panel comprising 18 urinary proteins in the human healthy population.

Authors:  Weifeng He; Chibing Huang; Gaoxing Luo; Ilaria Dal Prà; Jiayu Feng; Wei Chen; Li Ma; Ying Wang; Xiwei Chen; Jiangling Tan; Xiaorong Zhang; Ubaldo Armato; Jun Wu
Journal:  Proteomics       Date:  2012-04       Impact factor: 3.984

2.  A multiplex quantitative proteomics strategy for protein biomarker studies in urinary exosomes.

Authors:  Delfin A A Raj; Immacolata Fiume; Giovambattista Capasso; Gabriella Pocsfalvi
Journal:  Kidney Int       Date:  2012-03-14       Impact factor: 10.612

3.  Label-free mass spectrometric profiling of urinary proteins and metabolites from paediatric idiopathic nephrotic syndrome.

Authors:  Mirela Sedic; Lee A Gethings; Johannes P C Vissers; John P Shockcor; Stephen McDonald; Olga Vasieva; Maja Lemac; James I Langridge; Danica Batinić; Sandra Kraljević Pavelić
Journal:  Biochem Biophys Res Commun       Date:  2014-08-20       Impact factor: 3.575

4.  Systematic evaluation of sample preparation methods for gel-based human urinary proteomics: quantity, quality, and variability.

Authors:  Visith Thongboonkerd; Somchai Chutipongtanate; Rattiyaporn Kanlaya
Journal:  J Proteome Res       Date:  2006-01       Impact factor: 4.466

5.  Proteomic analysis of urine from male dogs during early stages of tubulointerstitial injury in a canine model of progressive glomerular disease.

Authors:  Mary B Nabity; George E Lees; Lawrence J Dangott; Rachel Cianciolo; Jan S Suchodolski; Jörg M Steiner
Journal:  Vet Clin Pathol       Date:  2011-03-29       Impact factor: 1.180

6.  Optimized preparation of urine samples for two-dimensional electrophoresis and initial application to patient samples.

Authors:  Daniel Lafitte; Bertrand Dussol; Soren Andersen; Alain Vazi; Patricia Dupuy; Ole N Jensen; Yvon Berland; Jean-Michel Verdier
Journal:  Clin Biochem       Date:  2002-11       Impact factor: 3.281

7.  aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data.

Authors:  George Rosenberger; Christina Ludwig; Hannes L Röst; Ruedi Aebersold; Lars Malmström
Journal:  Bioinformatics       Date:  2014-04-20       Impact factor: 6.937

Review 8.  Mass spectrometry-based label-free quantitative proteomics.

Authors:  Wenhong Zhu; Jeffrey W Smith; Chun-Ming Huang
Journal:  J Biomed Biotechnol       Date:  2009-11-10

9.  The Application of SILAC Mouse in Human Body Fluid Proteomics Analysis Reveals Protein Patterns Associated with IgA Nephropathy.

Authors:  Shilin Zhao; Rongxia Li; Xiaofan Cai; Wanjia Chen; Qingrun Li; Tao Xing; Wenjie Zhu; Y Eugene Chen; Rong Zeng; Yueyi Deng
Journal:  Evid Based Complement Alternat Med       Date:  2013-05-15       Impact factor: 2.629

10.  Western blots versus selected reaction monitoring assays: time to turn the tables?

Authors:  Ruedi Aebersold; Alma L Burlingame; Ralph A Bradshaw
Journal:  Mol Cell Proteomics       Date:  2013-06-10       Impact factor: 5.911

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  3 in total

1.  Effect of Sweetened Dried Cranberry Consumption on Urinary Proteome and Fecal Microbiome in Healthy Human Subjects.

Authors:  Nell Bekiares; Christian G Krueger; Jennifer J Meudt; Dhanansayan Shanmuganayagam; Jess D Reed
Journal:  OMICS       Date:  2017-06-15

Review 2.  Approaches to the discovery of non-invasive urinary biomarkers of prostate cancer.

Authors:  Andrej Jedinak; Kevin R Loughlin; Marsha A Moses
Journal:  Oncotarget       Date:  2018-08-21

Review 3.  Sickle cell nephropathy: A review of novel biomarkers and their potential roles in early detection of renal involvement.

Authors:  Osama Y Safdar; Rana M Baghdadi; Sereen A Alahmadi; Bana E Fakieh; Amaal M Algaydi
Journal:  World J Clin Pediatr       Date:  2022-01-09
  3 in total

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