Literature DB >> 25982201

Recruiting polycomb to chromatin.

Ila van Kruijsbergen1, Saartje Hontelez1, Gert Jan C Veenstra2.   

Abstract

Polycomb group (PcG) proteins are key regulators in establishing a transcriptional repressive state. Polycomb Repressive Complex 2 (PRC2), one of the two major PcG protein complexes, is essential for proper differentiation and maintenance of cellular identity. Multiple factors are involved in recruiting PRC2 to its genomic targets. In this review, we will discuss the role of DNA sequence, transcription factors, pre-existing histone modifications, and RNA in guiding PRC2 towards specific genomic loci. The DNA sequence itself influences the DNA methylation state, which is an important determinant of PRC2 recruitment. Other histone modifications are also important for PRC2 binding as PRC2 can respond to different cellular states via crosstalk between histone modifications. Additionally, PRC2 might be able to sense the transcriptional status of genes by binding to nascent RNA, which could also guide the complex to chromatin. In this review, we will discuss how all these molecular aspects define a local chromatin state which controls accurate, cell-type-specific epigenetic silencing by PRC2. This article is part of a Directed Issue entitled: Epigenetics dynamics in development and disease.
Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  Chromatin, Transcription regulation; Crosstalk; Epigenetics; Polycomb

Mesh:

Substances:

Year:  2015        PMID: 25982201      PMCID: PMC4564301          DOI: 10.1016/j.biocel.2015.05.006

Source DB:  PubMed          Journal:  Int J Biochem Cell Biol        ISSN: 1357-2725            Impact factor:   5.085


  101 in total

1.  Substrate preferences of the EZH2 histone methyltransferase complex.

Authors:  Cyrus Martin; Ru Cao; Yi Zhang
Journal:  J Biol Chem       Date:  2006-01-23       Impact factor: 5.157

2.  Polycomb-dependent H3K27me1 and H3K27me2 regulate active transcription and enhancer fidelity.

Authors:  Karin J Ferrari; Andrea Scelfo; Sriganesh Jammula; Alessandro Cuomo; Iros Barozzi; Alexandra Stützer; Wolfgang Fischle; Tiziana Bonaldi; Diego Pasini
Journal:  Mol Cell       Date:  2013-11-27       Impact factor: 17.970

3.  Dense chromatin activates Polycomb repressive complex 2 to regulate H3 lysine 27 methylation.

Authors:  Wen Yuan; Tong Wu; Hang Fu; Chao Dai; Hui Wu; Nan Liu; Xiang Li; Mo Xu; Zhuqiang Zhang; Tianhui Niu; Zhifu Han; Jijie Chai; Xianghong Jasmine Zhou; Shaorong Gao; Bing Zhu
Journal:  Science       Date:  2012-08-24       Impact factor: 47.728

4.  H3K36 methylation antagonizes PRC2-mediated H3K27 methylation.

Authors:  Wen Yuan; Mo Xu; Chang Huang; Nan Liu; She Chen; Bing Zhu
Journal:  J Biol Chem       Date:  2011-01-14       Impact factor: 5.157

5.  Polycomb PHF19 binds H3K36me3 and recruits PRC2 and demethylase NO66 to embryonic stem cell genes during differentiation.

Authors:  Gerard L Brien; Guillermo Gambero; David J O'Connell; Emilia Jerman; Siobhán A Turner; Chris M Egan; Eiseart J Dunne; Maike C Jurgens; Kieran Wynne; Lianhua Piao; Amanda J Lohan; Neil Ferguson; Xiaobing Shi; Krishna M Sinha; Brendan J Loftus; Gerard Cagney; Adrian P Bracken
Journal:  Nat Struct Mol Biol       Date:  2012-11-18       Impact factor: 15.369

6.  Elements of the Drosophila bithorax complex that mediate repression by Polycomb group products.

Authors:  J Simon; A Chiang; W Bender; M J Shimell; M O'Connor
Journal:  Dev Biol       Date:  1993-07       Impact factor: 3.582

7.  Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells.

Authors:  Jamy C Peng; Anton Valouev; Tomek Swigut; Junmei Zhang; Yingming Zhao; Arend Sidow; Joanna Wysocka
Journal:  Cell       Date:  2009-12-24       Impact factor: 41.582

8.  Cooperativity, specificity, and evolutionary stability of Polycomb targeting in Drosophila.

Authors:  Bernd Schuettengruber; Noa Oded Elkayam; Tom Sexton; Marianne Entrevan; Shani Stern; Aubin Thomas; Eitan Yaffe; Hugues Parrinello; Amos Tanay; Giacomo Cavalli
Journal:  Cell Rep       Date:  2014-10-02       Impact factor: 9.423

9.  GC-rich sequence elements recruit PRC2 in mammalian ES cells.

Authors:  Eric M Mendenhall; Richard P Koche; Thanh Truong; Vicky W Zhou; Biju Issac; Andrew S Chi; Manching Ku; Bradley E Bernstein
Journal:  PLoS Genet       Date:  2010-12-09       Impact factor: 5.917

10.  PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells.

Authors:  Syuzo Kaneko; Jinsook Son; Steven S Shen; Danny Reinberg; Roberto Bonasio
Journal:  Nat Struct Mol Biol       Date:  2013-10-20       Impact factor: 15.369

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  32 in total

1.  Heterochromatic histone modifications at transposons in Xenopus tropicalis embryos.

Authors:  Ila van Kruijsbergen; Saartje Hontelez; Dei M Elurbe; Simon J van Heeringen; Martijn A Huynen; Gert Jan C Veenstra
Journal:  Dev Biol       Date:  2016-09-14       Impact factor: 3.582

2.  YY1 binds to the E3' enhancer and inhibits the expression of the immunoglobulin κ gene via epigenetic modifications.

Authors:  Xiaorong Zhou; Weiwei Xian; Jie Zhang; Yiqing Zhu; Xiaoyi Shao; Yu Han; Yue Qi; Xiaoling Ding; Xiaoying Wang
Journal:  Immunology       Date:  2018-08-29       Impact factor: 7.397

Review 3.  Emerging concepts of epigenetic dysregulation in hematological malignancies.

Authors:  Panagiotis Ntziachristos; Omar Abdel-Wahab; Iannis Aifantis
Journal:  Nat Immunol       Date:  2016-08-01       Impact factor: 25.606

4.  DNMT1 modulates interneuron morphology by regulating Pak6 expression through crosstalk with histone modifications.

Authors:  Judit Symmank; Cathrin Bayer; Christiane Schmidt; Anne Hahn; Daniel Pensold; Geraldine Zimmer-Bensch
Journal:  Epigenetics       Date:  2018-08-07       Impact factor: 4.528

5.  The phytochemical 3,3'-diindolylmethane decreases expression of AR-controlled DNA damage repair genes through repressive chromatin modifications and is associated with DNA damage in prostate cancer cells.

Authors:  Zoraya Palomera-Sanchez; Gregory W Watson; Carmen P Wong; Laura M Beaver; David E Williams; Roderick H Dashwood; Emily Ho
Journal:  J Nutr Biochem       Date:  2017-05-25       Impact factor: 6.048

Review 6.  Epigenetic control of β-cell function and failure.

Authors:  Diana Bernstein; Maria L Golson; Klaus H Kaestner
Journal:  Diabetes Res Clin Pract       Date:  2016-11-21       Impact factor: 5.602

Review 7.  H3K27 methylation: a promiscuous repressive chromatin mark.

Authors:  Elizabeth T Wiles; Eric U Selker
Journal:  Curr Opin Genet Dev       Date:  2016-12-08       Impact factor: 5.578

8.  Combgap contributes to recruitment of Polycomb group proteins in Drosophila.

Authors:  Payal Ray; Sandip De; Apratim Mitra; Karel Bezstarosti; Jeroen A A Demmers; Karl Pfeifer; Judith A Kassis
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-21       Impact factor: 11.205

Review 9.  Emerging Transcriptional Mechanisms in the Regulation of Epithelial to Mesenchymal Transition and Cellular Plasticity in the Kidney.

Authors:  Letizia De Chiara; John Crean
Journal:  J Clin Med       Date:  2016-01-12       Impact factor: 4.241

10.  Embryonic transcription is controlled by maternally defined chromatin state.

Authors:  Saartje Hontelez; Ila van Kruijsbergen; Georgios Georgiou; Simon J van Heeringen; Ozren Bogdanovic; Ryan Lister; Gert Jan C Veenstra
Journal:  Nat Commun       Date:  2015-12-18       Impact factor: 14.919

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