Literature DB >> 25976608

Proteomics approaches shed new light on hibernation physiology.

Katharine R Grabek1, Sandra L Martin, Allyson G Hindle.   

Abstract

The broad phylogenetic distribution and rapid phenotypic transitions of mammalian hibernators imply that hibernation is accomplished by differential expression of common genes. Traditional candidate gene approaches have thus far explained little of the molecular mechanisms underlying hibernation, likely due to (1) incomplete and imprecise sampling of a complex phenotype, and (2) the forming of hypotheses about which genes might be important based on studies of model organisms incapable of such dynamic physiology. Unbiased screening approaches, such as proteomics, offer an alternative means to discover the cellular underpinnings that permit successful hibernation and may reveal previously overlooked, important pathways. Here, we review the findings that have emerged from proteomics studies of hibernation. One striking feature is the stability of the proteome, especially across the extreme physiological shifts of torpor-arousal cycles during hibernation. This has led to subsequent investigations of the role of post-translational protein modifications in altering protein activity without energetically wasteful removal and rebuilding of protein pools. Another unexpected finding is the paucity of universal proteomic adjustments across organ systems in response to the extreme metabolic fluctuations despite the universality of their physiological challenges; rather each organ appears to respond in a unique, tissue-specific manner. Additional research is needed to extend and synthesize these results before it will be possible to address the whole body physiology of hibernation.

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Year:  2015        PMID: 25976608     DOI: 10.1007/s00360-015-0905-9

Source DB:  PubMed          Journal:  J Comp Physiol B        ISSN: 0174-1578            Impact factor:   2.200


  106 in total

Review 1.  Natural hypometabolism during hibernation and daily torpor in mammals.

Authors:  Gerhard Heldmaier; Sylvia Ortmann; Ralf Elvert
Journal:  Respir Physiol Neurobiol       Date:  2004-08-12       Impact factor: 1.931

2.  Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ Orbitrap Velos.

Authors:  Zhou Li; Rachel M Adams; Karuna Chourey; Gregory B Hurst; Robert L Hettich; Chongle Pan
Journal:  J Proteome Res       Date:  2012-02-16       Impact factor: 4.466

3.  Intrinsic circannual regulation of brown adipose tissue form and function in tune with hibernation.

Authors:  Allyson G Hindle; Sandra L Martin
Journal:  Am J Physiol Endocrinol Metab       Date:  2013-12-10       Impact factor: 4.310

Review 4.  Renal adaptation during hibernation.

Authors:  Alkesh Jani; Sandra L Martin; Swati Jain; Daniel Keys; Charles L Edelstein
Journal:  Am J Physiol Renal Physiol       Date:  2013-09-18

5.  Microtubules from mammalian brain: some properties of their depolymerization products and a proposed mechanism of assembly and disassembly.

Authors:  M W Kirschner; R C Williams; M Weingarten; J C Gerhart
Journal:  Proc Natl Acad Sci U S A       Date:  1974-04       Impact factor: 11.205

6.  Comparison of hibernation, estivation and daily torpor in the edible dormouse, Glis glis.

Authors:  M Wilz; G Heldmaier
Journal:  J Comp Physiol B       Date:  2000-11       Impact factor: 2.200

7.  Regulation of phosphoglucomutase 1 phosphorylation and activity by a signaling kinase.

Authors:  Anupama Gururaj; Christopher J Barnes; Ratna K Vadlamudi; Rakesh Kumar
Journal:  Oncogene       Date:  2004-10-21       Impact factor: 9.867

8.  Physiology: hibernation in a tropical primate.

Authors:  Kathrin H Dausmann; Julian Glos; Jörg U Ganzhorn; Gerhard Heldmaier
Journal:  Nature       Date:  2004-06-24       Impact factor: 49.962

9.  Serum immune-related proteins are differentially expressed during hibernation in the American black bear.

Authors:  Brian A Chow; Seth W Donahue; Michael R Vaughan; Brendan McConkey; Mathilakath M Vijayan
Journal:  PLoS One       Date:  2013-06-25       Impact factor: 3.240

10.  KEGG spider: interpretation of genomics data in the context of the global gene metabolic network.

Authors:  Alexey V Antonov; Sabine Dietmann; Hans W Mewes
Journal:  Genome Biol       Date:  2008-12-18       Impact factor: 13.583

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  11 in total

Review 1.  Role of AMP-activated protein kinase in metabolic depression in animals.

Authors:  Mark H Rider
Journal:  J Comp Physiol B       Date:  2015-07-15       Impact factor: 2.200

Review 2.  Nature's fat-burning machine: brown adipose tissue in a hibernating mammal.

Authors:  Mallory A Ballinger; Matthew T Andrews
Journal:  J Exp Biol       Date:  2018-03-07       Impact factor: 3.312

Review 3.  Neural Signaling Metabolites May Modulate Energy Use in Hibernation.

Authors:  Kelly L Drew; Carla Frare; Sarah A Rice
Journal:  Neurochem Res       Date:  2016-11-23       Impact factor: 3.996

4.  Changes in the phosphoproteome of brown adipose tissue during hibernation in the ground squirrel, Ictidomys tridecemlineatus.

Authors:  Gaëtan Herinckx; Nusrat Hussain; Fred R Opperdoes; Kenneth B Storey; Mark H Rider; Didier Vertommen
Journal:  Physiol Genomics       Date:  2017-07-10       Impact factor: 3.107

Review 5.  Seasonal and post-trauma remodeling in cone-dominant ground squirrel retina.

Authors:  Dana K Merriman; Benjamin S Sajdak; Wei Li; Bryan W Jones
Journal:  Exp Eye Res       Date:  2016-01-22       Impact factor: 3.467

6.  Gene expression profiling during hibernation in the European hamster.

Authors:  Célia Gautier; Béatrice Bothorel; Dominique Ciocca; Damien Valour; Albane Gaudeau; Clémence Dupré; Giulia Lizzo; Chantal Brasseur; Isabelle Riest-Fery; Jean-Philippe Stephan; Olivier Nosjean; Jean A Boutin; Sophie-Pénélope Guénin; Valérie Simonneaux
Journal:  Sci Rep       Date:  2018-09-03       Impact factor: 4.379

7.  Liver Transcriptome Dynamics During Hibernation Are Shaped by a Shifting Balance Between Transcription and RNA Stability.

Authors:  Austin E Gillen; Rui Fu; Kent A Riemondy; Jennifer Jager; Bin Fang; Mitchell A Lazar; Sandra L Martin
Journal:  Front Physiol       Date:  2021-05-21       Impact factor: 4.566

8.  A sample preparation workflow for adipose tissue shotgun proteomics and proteogenomics.

Authors:  Jane I Khudyakov; Jared S Deyarmin; Ryan M Hekman; Laura Pujade Busqueta; Rasool Maan; Melony J Mody; Reeti Banerjee; Daniel E Crocker; Cory D Champagne
Journal:  Biol Open       Date:  2018-11-19       Impact factor: 2.422

9.  Genetic variation drives seasonal onset of hibernation in the 13-lined ground squirrel.

Authors:  Katharine R Grabek; Thomas F Cooke; L Elaine Epperson; Kaitlyn K Spees; Gleyce F Cabral; Shirley C Sutton; Dana K Merriman; Sandra L Martin; Carlos D Bustamante
Journal:  Commun Biol       Date:  2019-12-20

10.  Deep longitudinal multiomics profiling reveals two biological seasonal patterns in California.

Authors:  M Reza Sailani; Ahmed A Metwally; Wenyu Zhou; Sophia Miryam Schüssler-Fiorenza Rose; Sara Ahadi; Kevin Contrepois; Tejaswini Mishra; Martin Jinye Zhang; Łukasz Kidziński; Theodore J Chu; Michael P Snyder
Journal:  Nat Commun       Date:  2020-10-01       Impact factor: 14.919

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