Literature DB >> 25974326

Multi-organ localization with cascaded global-to-local regression and shape prior.

Romane Gauriau1, Rémi Cuingnet2, David Lesage2, Isabelle Bloch3.   

Abstract

We propose a method for fast, accurate and robust localization of several organs in medical images. We generalize the global-to-local cascade of regression random forest to multiple organs. A first regressor encodes the global relationships between organs, learning simultaneously all organs parameters. Then subsequent regressors refine the localization of each organ locally and independently for improved accuracy. By combining the regression vote distribution and the organ shape prior (through probabilistic atlas representation) we compute confidence maps that are organ-dedicated probability maps. They are used within the cascade itself, to better select the test voxels for the second set of regressors, and to provide richer information than the classical bounding boxes result thanks to the shape prior. We propose an extensive study of the different learning and testing parameters, showing both their robustness to reasonable perturbations and their influence on the final algorithm accuracy. Finally we demonstrate the robustness and accuracy of our approach by evaluating the localization of six abdominal organs (liver, two kidneys, spleen, gallbladder and stomach) on a large and diverse database of 130 CT volumes. Moreover, the comparison of our results with two existing methods shows significant improvements brought by our approach and our deep understanding and optimization of the parameters.
Copyright © 2015 Elsevier B.V. All rights reserved.

Keywords:  3D CT; Abdominal organs; Multi-organ localization; Random forest; Regression

Mesh:

Year:  2015        PMID: 25974326     DOI: 10.1016/j.media.2015.04.007

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  4 in total

1.  Automatic abdominal multi-organ segmentation using deep convolutional neural network and time-implicit level sets.

Authors:  Peijun Hu; Fa Wu; Jialin Peng; Yuanyuan Bao; Feng Chen; Dexing Kong
Journal:  Int J Comput Assist Radiol Surg       Date:  2016-11-24       Impact factor: 2.924

2.  Anatomically consistent CNN-based segmentation of organs-at-risk in cranial radiotherapy.

Authors:  Pawel Mlynarski; Hervé Delingette; Hamza Alghamdi; Pierre-Yves Bondiau; Nicholas Ayache
Journal:  J Med Imaging (Bellingham)       Date:  2020-02-13

Review 3.  Deep Learning and Its Applications in Biomedicine.

Authors:  Chensi Cao; Feng Liu; Hai Tan; Deshou Song; Wenjie Shu; Weizhong Li; Yiming Zhou; Xiaochen Bo; Zhi Xie
Journal:  Genomics Proteomics Bioinformatics       Date:  2018-03-06       Impact factor: 7.691

4.  An automated framework for localization, segmentation and super-resolution reconstruction of fetal brain MRI.

Authors:  Michael Ebner; Guotai Wang; Wenqi Li; Michael Aertsen; Premal A Patel; Rosalind Aughwane; Andrew Melbourne; Tom Doel; Steven Dymarkowski; Paolo De Coppi; Anna L David; Jan Deprest; Sébastien Ourselin; Tom Vercauteren
Journal:  Neuroimage       Date:  2019-11-06       Impact factor: 6.556

  4 in total

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