Literature DB >> 25971910

Normalization of Affymetrix miRNA Microarrays for the Analysis of Cancer Samples.

Di Wu1,2, Michael P Gantier3,4.   

Abstract

microRNA (miRNA) microarray normalization is a critical step for the identification of truly differentially expressed miRNAs. This is particularly important when dealing with cancer samples that have a global miRNA decrease. In this chapter, we provide a simple step-by-step procedure that can be used to normalize Affymetrix miRNA microarrays, relying on robust normal-exponential background correction with cyclic loess normalization.

Entities:  

Keywords:  Affymetrix; Cancer samples; Normalization; miRNA microarray; microRNA

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Year:  2016        PMID: 25971910     DOI: 10.1007/7651_2015_239

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  3 in total

1.  Differential roles of human PUS10 in miRNA processing and tRNA pseudouridylation.

Authors:  Jinghui Song; Yuan Zhuang; Chenxu Zhu; Haowei Meng; Bo Lu; Bingteng Xie; Jinying Peng; Mo Li; Chengqi Yi
Journal:  Nat Chem Biol       Date:  2019-12-09       Impact factor: 15.040

2.  Establishment of a miRNA-mRNA regulatory network in metastatic renal cell carcinoma and screening of potential therapeutic targets.

Authors:  Jie Zhu; Xin Ma; Yu Zhang; Dong Ni; Qing Ai; Hongzhao Li; Xu Zhang
Journal:  Tumour Biol       Date:  2016-11-02

3.  Curcumin inhibits the proliferation and invasion of human osteosarcoma cell line MG-63 by regulating miR-138.

Authors:  Dazhi Yu; Fengmei An; Xu He; Xuecheng Cao
Journal:  Int J Clin Exp Pathol       Date:  2015-11-01
  3 in total

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