| Literature DB >> 25970176 |
Anthony S Ablordey, Koen Vandelannoote, Isaac A Frimpong, Evans K Ahortor, Nana Ama Amissah, Miriam Eddyani, Lies Durnez, Françoise Portaels, Bouke C de Jong, Herwig Leirs, Jessica L Porter, Kirstie M Mangas, Margaret M C Lam, Andrew Buultjens, Torsten Seemann, Nicholas J Tobias, Timothy P Stinear.
Abstract
Entities:
Year: 2015 PMID： 25970176 PMCID： PMC4430544 DOI： 10.1371/journal.pntd.0003798
Source DB: PubMed Journal: PLoS Negl Trop Dis ISSN： 1935-2727
M. ulcerans isolate and DNA sequencing information
| No. | Strain ID | Isolation date | Patient Age(years) | Patient Gender | Village/Genotype | District/Country | Location | Seq Plat. | Avg cov. | ENA | Ref. |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | S15 | 02/02/2010 | 5 | M | Ananekrom/ Agogo-1 | Ashanti/Ghana | 6.91481, -1.01658 | SE PGM | 106 | SAMEA3212578 | This study |
| 2 | S43 | 09/05/2010 | 13 | F | Ananekrom Agogo-2 | Ashanti /Ghana | 6.91481, -1.01658 | SE PGM | 120 | SAMEA3212570 | This study |
| 3 | S38 | 23/06/2010 | 12 | M | Serebuso/ Agogo-1 | Ashanti /Ghana | 6.94838, -1.02373 | SE PGM | 104 | SAMEA3212580 | This study |
| 4 | F64 | 08/09/2010 | 3 | M | Nsonyameye/ Agogo-1 | Ashanti /Ghana | 6.93744, -0.96464 | SE PGM | 99 | SAMEA3212574 | This study |
| 5 | F70 | 15/09/2010 | 32 | F | Baama/ Agogo-1 | Ashanti /Ghana | 6.96810, -0.94013 | SE PGM | 61 | SAMEA3212582 | This study |
| 6 | 1510 (F79) | 22/09/2010 | 28 | F | Bebuso/ Agogo-2 | Ashanti /Ghana | 6.88909, -0.97209 | PE Illumina | 81 | SAMEA3212565 | This study |
| 7 | F75 | 07/10/2010 | 18 | F | Afriserie OK/ Agogo-1 | Ashanti /Ghana | 7.01992, -0.92325 | SE PGM | 68 | SAMEA3212581 | This study |
| 8 | F85 | 20/10/2010 | 28 | F | Nshyieso/ Agogo-2 | Ashanti /Ghana | 6.95910, -1.01860 | SE PGM | 71 | SAMEA3212566 | This study |
| 9 | S77 | 24/11/2010 | 3 | F | Serebuso/ Agogo-2 | Ashanti /Ghana | 6.94838, -1.02373 | SE PGM | 83 | SAMEA3212571 | This study |
| 10 | 2610 (F92) | 24/12/2010 | 14 | F | Nsonyameye/ Agogo-1 | Ashanti /Ghana | 6.93744, -0.96464 | PE Illumina | 67 | SAMEA3212567 | This study |
| 11 | F13 | 02/02/2011 | 8 | F | Bebosu Ado/ Agogo-1 | Ashanti /Ghana | 6.88909, -0.97209 | SE PGM | 92 | SAMEA3212583 | This study |
| 12 | F65 | 02/09/2011 | 28 | F | Ananekrom/ Agogo-2 | Ashanti /Ghana | 6.91481, -1.01658 | SE PGM | 89 | SAMEA3212576 | This study |
| 13 | F74 | 21/09/2011 | 38 | M | Dukusen Agogo-2 | Ashanti /Ghana | 6.97683, -0.98278 | SE PGM | 46 | SAMEA3212572 | This study |
| 14 | S72 | 12/12/2011 | 11 | M | Afriserie/ Agogo-1 | Ashanti /Ghana | 7.01992, -0.92325 | SE PGM | 128 | SAMEA3212575 | This study |
| 15 | 612 (F36) | 18/07/2012 | 37 | M | Ananekrom/ Agogo-1 | Ashanti /Ghana | 6.91481, -1.01658 | PE Illumina | 97 | SAMEA3212568 | This study |
| 16 | 212 (F3) | 08/02/2012 | 11 | F | Serebuso/ Agogo-2 | Ashanti /Ghana | 6.94838, -1.02373 | PE Illumina | 62 | SAMEA3212577 | This study |
| 17 | 712 (S24) | 02/08/2012 | 40 | F | Wenamda/ Agogo-2 | Volta/Ghana | 7.07738, 0.092016 | PE Illumina | 214 | SAMEA3212569 | This study |
| 18 | 412 (F37) | 02/08/2012 | 12 | M | Ananekrom/ Agogo-1 | Ashanti /Ghana | 6.91481, -1.01658 | PE Illumina | 162 | SAMEA3212584 | This study |
| 19 | IC21 | 07/2000 | Bondoukou | Cote d’Ivoire | 8.03333, -2.8000 | SE PGM | 79 | SAMEA3212579 | This study | ||
| 20 | IC38 | 07/2000 | Dimbokro | Cote d’Ivoire | 6.64445, -4.70540 | SE PGM | 63 | SAMEA3212573 | This study | ||
| 21 | ITM000909 | 2000 | Tchekpo Deve | Maritime/Togo | 6.48434, 1.369718 | SE PGM | 45 | [45] | |||
| 22 | ITM991591 | 1999 | Anagali | Maritime/Togo | 6.48434, 1.369718 | SE PGM | 55 | [45] | |||
| 23 | ITM102686 | 2010 | M | Ibadan | Oyo State/Nigeria | 7.50194, 3.982327 | SE PGM | 51 | [45] | ||
| 24 | ITM5151 | 1971 | Maniema/DRC | -4.18655, 26.43937 | SE PGM | 51 | [45] | ||||
| 25 | NM14.01 | 2001 | Densu/Ghana | 5.72532, -0.31075 | PE Illumina | 111 | [42] | ||||
| 26 | NM43.02 | 2002 | Densu/Ghana | 5.69881, -0.38597 | PE Illumina | 112 | [42] | ||||
| 27 | NM49.02 | 2002 | Densu/Ghana | 5.70209, -0.29818 | PE Illumina | 114 | [42] | ||||
| 28 | NM54.02 | 2002 | Densu/Ghana | 5.6568, -0.32419 | PE Illumina | 73 | [42] | ||||
| 29 | NM33.04 | 2004 | Amansie West/Ghana | 6.68712, -1.62197 | PE Illumina | 84 | [42] | ||||
| 30 | Agy99 | 08/1999 | 5 | F | ulcer | Amansie West/Ghana | 6.68712, -1.62197 | Sanger | [41] | ||
| 31 | ITM980535 | 1998 | 12 | F | Djigbé | Atlantique/Benin | 6.885076, 2.362017 | PE Illumina | 257 | [42] | |
| 32 | ITM000945 | 2000 | 21 | F | Hwegoudo | Atlantique/Benin | 6.7234, 2.377314 | PE Illumina | 231 | [42] | |
| 33 | ITM001506 | 2000 | 6 | F | Wokon | Zou/Benin | 7.099851, 2.464233 | PE Illumina | 233 | [42] |
Notes:
1parentheses indicate alternate strain code,
2expressed as latitude and longitude,
3Democratic Republic of the Congo,
4reference genome