| Literature DB >> 25969711 |
Jia Zheng1, Xinhua Xiao1, Qian Zhang1, Miao Yu1, Jianping Xu1, Zhixin Wang1.
Abstract
AIMS/Entities:
Keywords: Early onset; Glucose intolerance; Maternal low-protein diet
Year: 2014 PMID: 25969711 PMCID: PMC4420558 DOI: 10.1111/jdi.12303
Source DB: PubMed Journal: J Diabetes Investig ISSN: 2040-1116 Impact factor: 4.232
Oligonucleotide sequences for the quantitative real-time polymerase chain reaction analyses
| Gene symbol | Forward primer | Reverse primer |
|---|---|---|
| TGTTACCAACTGGGACGACA | GGGGTGTTGAAGGTCTCAAA | |
| CTCGTGATAGGCATCCTTGT | AGCCAGCAATGAAAGTGAAC | |
| TATTACCGCATGGAGACATT | TTAGTTGCCCACCATGACTT | |
| TGCCTGAGTTGTAGAAAGAA | CTTTGTAGGGCATCTGAGAG | |
| TTCAAGACCGCACATAAAGC | CGTTGAGAAACATGCGTAGA | |
| CTGTCCGCCACTTCGAGTC | GATACGCCCAAATGCACCAC | |
| TCACCAGCAGCCTAAAAGCA | CCGGCGAGAAGAAAGGAAGT | |
| CGGGCTGAGAAGTCACGTT | TGCGAGTGGTCTTCCATCAC |
Aqp7, aquaporin 7; Cpt1b, carnitine palmitoyltransferase 1b; Lpl, lipoprotein lipase; Cyp7a1, cytochrome P450, family 7, subfamily a, polypeptide 1; PPAR-α, peroxisome proliferator activator receptor alpha; PPAR-Δ, peroxisome proliferator activator receptor delta; PPAR-γ, peroxisome proliferator activator receptor gamma.
Figure 1(a) Birthweight, (b) bodyweight, (c) body length, (d) epigonadal white adipose tissue (eWAT) and (e) food intake of the offspring at weaning. All values are the mean ± standard error of the mean (n = 12 mice/group). *P < 0.05 vs normal chow diet (NCD), ***P < 0.001 vs NCD assessed by Student's t-test. LPD, low-protein diet.
Figure 2(a) Intraperitoneal glucose tolerance test (IPGTT) and (b) area under the curve (AUC) of the offspring at weaning. All values are the mean ± standard error of the mean (n = 12 mice/group). *P < 0.01 vs normal chow diet (NCD) assessed by Student's t-test and two-way anova. LPD, low-protein diet.
Figure 3(a) Fasting blood glucose, (b) serum insulin levels (c) and homeostasis model assessment of insulin resistance (HOMA-IR) of the offspring at weaning. All values are the mean ± standard error of the mean (n = 12 mice/group). *P < 0.05 vs normal chow diet (NCD) assessed by Student's t-test. FBG, fasting blood glucose; LPD, low-protein diet.
Figure 4(a) Serum triacylglycerol and (b) total cholesterol levels of the offspring at weaning. All values are the mean ± standard error of the mean (n = 12 mice/group). ***P < 0.001 vs normal chow diet (NCD) assessed by Student's t-test. LPD, low-protein diet.
Figure 5Hematoxylin–eosin staining of liver tissues of the offspring at weaning. Liver histology in offspring at weaning from dams fed (a) normal chow diet (NCD) and (b) low-protein diet (LPD) both had normal liver structure. Original magnification, ×40.
Gene ontology (biological process) of differentially expressed genes between the two groups
| GO classification | GO term | GO ID | C | O | E | R | raw | adj |
|---|---|---|---|---|---|---|---|---|
| Biological process | Sterol metabolic process | GO:0016125 | 107 | 12 | 1.07 | 11.2 | 8.29E-10 | 1.06E-06 |
| Cholesterol metabolic process | GO:0008203 | 100 | 11 | 1 | 10.98 | 5.24E-09 | 3.35E-06 | |
| Steroid metabolic process | GO:0008202 | 238 | 14 | 2.38 | 5.87 | 1.40E-07 | 5.96E-05 | |
| Regulation of immune system process | GO:0002682 | 695 | 23 | 6.96 | 3.3 | 5.97E-07 | 0.0002 | |
| Lipid metabolic process | GO:0006629 | 944 | 27 | 9.46 | 2.86 | 1.03E-06 | 0.0003 | |
| Alcohol metabolic process | GO:0006066 | 254 | 13 | 2.54 | 5.11 | 1.89E-06 | 0.0004 | |
| Monocarboxylic acid metabolic process | GO:0032787 | 367 | 15 | 3.68 | 4.08 | 4.94E-06 | 0.0008 | |
| Sterol biosynthetic process | GO:0016126 | 43 | 6 | 0.43 | 13.93 | 4.24E-06 | 0.0008 | |
| Oxidation-reduction process | GO:0055114 | 919 | 25 | 9.21 | 2.72 | 6.38E-06 | 0.0009 | |
| Single-organism biosynthetic process | GO:0044711 | 385 | 15 | 3.86 | 3.89 | 8.76E-06 | 0.0011 | |
| Mitotic cell cycle | GO:0000278 | 542 | 18 | 5.43 | 3.32 | 1.00E-05 | 0.0012 | |
| Oxoacid metabolic process | GO:0043436 | 718 | 21 | 7.19 | 2.92 | 1.25E-05 | 0.0012 | |
| Cytolysis | GO:0019835 | 30 | 5 | 0.3 | 16.64 | 1.12E-05 | 0.0012 | |
| Organic acid metabolic process | GO:0006082 | 732 | 21 | 7.33 | 2.86 | 1.67E-05 | 0.0015 | |
| Carboxylic acid metabolic process | GO:0019752 | 676 | 20 | 6.77 | 2.95 | 1.72E-05 | 0.0015 | |
| Cell cycle | GO:0007049 | 1136 | 27 | 11.38 | 2.37 | 3.00E-05 | 0.0021 | |
| Small molecule biosynthetic process | GO:0044283 | 373 | 14 | 3.74 | 3.75 | 2.64E-05 | 0.0021 | |
| Lipid biosynthetic process | GO:0008610 | 428 | 15 | 4.29 | 3.5 | 3.02E-05 | 0.0021 | |
| Cholesterol biosynthetic process | GO:0006695 | 37 | 5 | 0.37 | 13.49 | 3.25E-05 | 0.0022 | |
| Steroid biosynthetic process | GO:0006694 | 125 | 8 | 1.25 | 6.39 | 3.87E-05 | 0.0025 | |
| Regulation of lipid biosynthetic process | GO:0046890 | 96 | 7 | 0.96 | 7.28 | 5.18E-05 | 0.0031 | |
| Triglyceride metabolic process | GO:0006641 | 69 | 6 | 0.69 | 8.68 | 6.71E-05 | 0.0039 | |
| Small molecule metabolic process | GO:0044281 | 1824 | 36 | 18.27 | 1.97 | 7.08E-05 | 0.0039 | |
| Triglyceride biosynthetic process | GO:0019432 | 23 | 4 | 0.23 | 17.36 | 7.49E-05 | 0.004 | |
| Immune system process | GO:0002376 | 1353 | 29 | 13.55 | 2.14 | 9.52E-05 | 0.0041 | |
| Neutral lipid biosynthetic process | GO:0046460 | 26 | 4 | 0.26 | 15.36 | 0.0001 | 0.0041 | |
| Acylglycerol metabolic process | GO:0006639 | 79 | 6 | 0.79 | 7.58 | 0.0001 | 0.0041 | |
| Complement activation, alternative pathway | GO:0006957 | 10 | 3 | 0.1 | 29.95 | 0.0001 | 0.0041 | |
| Acylglycerol biosynthetic process | GO:0046463 | 26 | 4 | 0.26 | 15.36 | 0.0001 | 0.0041 | |
| Alcohol biosynthetic process | GO:0046165 | 109 | 7 | 1.09 | 6.41 | 0.0001 | 0.0041 | |
| Cellular lipid metabolic process | GO:0044255 | 667 | 18 | 6.68 | 2.69 | 0.0001 | 0.0041 | |
| Neutral lipid metabolic process | GO:0006638 | 81 | 6 | 0.81 | 7.39 | 0.0002 | 0.0075 | |
| Cell cycle phase | GO:0022403 | 617 | 17 | 6.18 | 2.75 | 0.0002 | 0.0075 | |
| Positive regulation of immune system process | GO:0002684 | 440 | 14 | 4.41 | 3.18 | 0.0002 | 0.0075 | |
| Retinoic acid catabolic process | GO:0034653 | 3 | 2 | 0.03 | 66.55 | 0.0003 | 0.0101 | |
| Saturated monocarboxylic acid metabolic process | GO:0032788 | 3 | 2 | 0.03 | 66.55 | 0.0003 | 0.0101 | |
| Unsaturated monocarboxylic acid metabolic process | GO:0032789 | 3 | 2 | 0.03 | 66.55 | 0.0003 | 0.0101 | |
| Diterpenoid catabolic process | GO:0016103 | 3 | 2 | 0.03 | 66.55 | 0.0003 | 0.0101 | |
| Death | GO:0016265 | 1475 | 29 | 14.78 | 1.96 | 0.0004 | 0.0122 | |
| Myeloid leukocyte differentiation | GO:0002573 | 131 | 7 | 1.31 | 5.33 | 0.0004 | 0.0122 |
Fold change >1.5, P < 0.05. adjP, P-value adjusted by the multiple test adjustment; C, the number of reference genes in the category; GO, Gene Ontology, O, the number of genes in the gene set and category; E, the expected number in the category; R, ratio of enrichment; rawP, P-value from hypergeometric test.
Kyoto Encyclopedia of Genes and Genomes pathways with differentially expressed genes between the two groups
| KEGG ID | Pathway name | Gene symbols | C | O | E | R | raw | adj |
|---|---|---|---|---|---|---|---|---|
| 01100 | Metabolic pathways | Idi1, Ido2, Chkb, Cyp51, Nsdhl, Cyp2c54, Sds, Nans, Ces3b, Cyp7a1, Asns, Pnliprp1, Sc4 mol, Nnmt, Fdps, Cryl1, Sqle, Ggt6, Cyp2c38, Ces3a, Hsd3b5, Ccbl1, Agpat9, Bdh2, Ldhb, Acss3, Acmsd, Cyp2u1 | 1184 | 28 | 5.4 | 5.18 | 1.78E-12 | 1.16E-10 |
| 04630 | Jak-STAT signaling pathway | Lepr, Socs2, Irf9, Myc, Pim1, Ccnd1, Cish | 153 | 7 | 0.7 | 10 | 7.31E-06 | 9.50E-05 |
| 03320 | PPAR signaling pathway | Cyp7a1, Aqp7, Lpl, Cpt1b | 80 | 4 | 0.4 | 11 | 0.0005 | 0.0036 |
| 00590 | Arachidonic acid metabolism | Cyp2c54, Cyp2c38, Ggt6, Cyp2u1 | 90 | 4 | 0.4 | 9.74 | 0.0008 | 0.0047 |
| 00561 | Glycerolipid metabolism | Agpat9, Lpl, Pnliprp1 | 51 | 3 | 0.2 | 12.9 | 0.0017 | 0.0069 |
| 00564 | Glycerophospholipid metabolism | Agpat9, Chkb, Gpd2 | 80 | 3 | 0.4 | 8.22 | 0.006 | 0.015 |
| 01040 | Biosynthesis of unsaturated fatty acids | Acot4, Acot3 | 25 | 2 | 0.1 | 17.5 | 0.0058 | 0.015 |
| 04950 | Maturity onset diabetes of the young | Hhex, Hes1 | 26 | 2 | 0.1 | 16.9 | 0.0063 | 0.0152 |
| 04975 | Fat digestion and absorption | Pnliprp1, Apoa4 | 45 | 2 | 0.2 | 9.74 | 0.018 | 0.0355 |
| 00591 | Linoleic acid metabolism | Cyp2c54, Cyp2c38 | 46 | 2 | 0.2 | 9.53 | 0.0188 | 0.0359 |
| 00140 | Steroid hormone biosynthesis | Hsd3b5, Cyp7a1 | 55 | 2 | 0.3 | 7.97 | 0.0263 | 0.0442 |
Fold change >1.5, P < 0.05. adjP, P-value adjusted by the multiple test adjustment; C, the number of reference genes in the category; KEGG, Kyoto Encyclopedia of Genes and Genomes; O, the number of genes in the gene set and category; E, the expected number in the category; R, ratio of enrichment; rawP, P-value from hypergeometric test.
Figure 6The volcano plot graph of the differentially expressed genes of the offspring from the maternal low-protein diet (LPD) vs normal chow diet (NCD) groups at weaning. The volcano plot graph shows all differentially expressed genes based on the fold change and P-value. The blue lines show that the fold change in the gene expression threshold is 1.5 (log2 fold change = 0.59). The pink line shows that the P-value of the t-test threshold is 0.05. There were four genes located in the peroxisome proliferator-activated receptor signaling pathway. Aqp7, aquaporin 7; Cpt1b, carnitine palmitoyltransferase 1b; Lpl, lipoprotein lipase; Cyp7a1, cytochrome P450, family 7, subfamily a, polypeptide 1.
Fold change of gene expression measured through gene array and validated by quantitative real-time polymerase chain reaction
| Gene symbol | Fold change (gene array) | Fold change (qRT–PCR) | ||
|---|---|---|---|---|
| 2.358 | 0.002353 | 2.6 ± 0.52 | 0.0064 | |
| 1.824 | 0.003674 | 1.7 ± 0.34 | 0.013 | |
| 1.571 | 0.002817 | 1.6 ± 0.28 | 0.0284 | |
| −2.308 | 0.01338 | −2.5 ± 0.16 | 0.026 | |
| 1.12 | 0.2977 | 1.07 ± 0.18 | 0.38 | |
| 1.403 | 0.062 | 1.48 ± 0.03 | 0.046 |
P < 0.05 vs normal chow diet assessed by Student's t-test. All values are the mean ± standard error of the mean (n = 12 mice/group). Aqp7, aquaporin 7; Cpt1b, carnitine palmitoyltransferase 1b; Lpl, lipoprotein lipase; Cyp7a1, cytochrome P450, family 7, subfamily a, polypeptide 1; PPAR-α, peroxisome proliferator activator receptor alpha; PPAR-γ, peroxisome proliferator activator receptor gamma; qRT–PCR, quantitative real-time polymerase chain reaction.