Literature DB >> 25967118

Using RecA protein to enhance kinetic rates of DNA circuits.

J N Milligan1, A D Ellington.   

Abstract

While DNA circuits are becoming increasingly useful as signal transducers, their utility is inhibited by their slow catalytic rate. Here, we demonstrate how RecA, a recombination enzyme that catalyzes sequence specific strand exchange, can be used to increase circuit rates up to 9-fold. We also show how the introduction of RNA into DNA circuits further controls the specificity of RecA strand exchange, improving signal-to-noise.

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Year:  2015        PMID: 25967118      PMCID: PMC4446201          DOI: 10.1039/c5cc02261d

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  34 in total

1.  Logical computation using algorithmic self-assembly of DNA triple-crossover molecules.

Authors:  C Mao; T H LaBean; J H Relf; N C Seeman
Journal:  Nature       Date:  2000-09-28       Impact factor: 49.962

2.  DNA molecule provides a computing machine with both data and fuel.

Authors:  Yaakov Benenson; Rivka Adar; Tamar Paz-Elizur; Zvi Livneh; Ehud Shapiro
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-24       Impact factor: 11.205

3.  Shaping up nucleic acid computation.

Authors:  Xi Chen; Andrew D Ellington
Journal:  Curr Opin Biotechnol       Date:  2010-06-09       Impact factor: 9.740

4.  Sequence-specific molecular lithography on single DNA molecules.

Authors:  Kinneret Keren; Michael Krueger; Rachel Gilad; Gdalyahu Ben-Yoseph; Uri Sivan; Erez Braun
Journal:  Science       Date:  2002-07-05       Impact factor: 47.728

5.  Programming biomolecular self-assembly pathways.

Authors:  Peng Yin; Harry M T Choi; Colby R Calvert; Niles A Pierce
Journal:  Nature       Date:  2008-01-17       Impact factor: 49.962

6.  Engineering entropy-driven reactions and networks catalyzed by DNA.

Authors:  David Yu Zhang; Andrew J Turberfield; Bernard Yurke; Erik Winfree
Journal:  Science       Date:  2007-11-16       Impact factor: 47.728

Review 7.  Dynamic DNA nanotechnology using strand-displacement reactions.

Authors:  David Yu Zhang; Georg Seelig
Journal:  Nat Chem       Date:  2011-02       Impact factor: 24.427

8.  Real-time observation of RecA filament dynamics with single monomer resolution.

Authors:  Chirlmin Joo; Sean A McKinney; Muneaki Nakamura; Ivan Rasnik; Sua Myong; Taekjip Ha
Journal:  Cell       Date:  2006-08-11       Impact factor: 41.582

9.  Programming an in vitro DNA oscillator using a molecular networking strategy.

Authors:  Kevin Montagne; Raphael Plasson; Yasuyuki Sakai; Teruo Fujii; Yannick Rondelez
Journal:  Mol Syst Biol       Date:  2011-02-01       Impact factor: 11.429

10.  Synthetic in vitro transcriptional oscillators.

Authors:  Jongmin Kim; Erik Winfree
Journal:  Mol Syst Biol       Date:  2011-02-01       Impact factor: 11.429

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  3 in total

1.  Enhancement of RecA-mediated self-assembly in DNA nanostructures through basepair mismatches and single-strand nicks.

Authors:  Sybilla Louise Corbett; Rajan Sharma; Alexander Giles Davies; Christoph Wälti
Journal:  Sci Rep       Date:  2017-01-23       Impact factor: 4.379

2.  Accelerating DNA-Based Computing on a Supramolecular Polymer.

Authors:  Wouter Engelen; Sjors P W Wijnands; Maarten Merkx
Journal:  J Am Chem Soc       Date:  2018-07-24       Impact factor: 15.419

3.  Catalytic DNA Polymerization Can Be Expedited by Active Product Release.

Authors:  Pepijn G Moerman; Momcilo Gavrilov; Taekjip Ha; Rebecca Schulman
Journal:  Angew Chem Int Ed Engl       Date:  2022-04-20       Impact factor: 16.823

  3 in total

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