Literature DB >> 25965576

MULTEM: A new multislice program to perform accurate and fast electron diffraction and imaging simulations using Graphics Processing Units with CUDA.

I Lobato1, D Van Dyck2.   

Abstract

The main features and the GPU implementation of the MULTEM program are presented and described. This new program performs accurate and fast multislice simulations by including higher order expansion of the multislice solution of the high energy Schrödinger equation, the correct subslicing of the three-dimensional potential and top-bottom surfaces. The program implements different kinds of simulation for CTEM, STEM, ED, PED, CBED, ADF-TEM and ABF-HC with proper treatment of the spatial and temporal incoherences. The multislice approach described here treats the specimen as amorphous material which allows a straightforward implementation of the frozen phonon approximation. The generalized transmission function for each slice is calculated when is needed and then discarded. This allows us to perform large simulations that can include millions of atoms and keep the computer memory requirements to a reasonable level.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Electron scattering factors; GPU; Multislice simulations; Phonons

Year:  2015        PMID: 25965576     DOI: 10.1016/j.ultramic.2015.04.016

Source DB:  PubMed          Journal:  Ultramicroscopy        ISSN: 0304-3991            Impact factor:   2.689


  4 in total

1.  Direct Visualisation of the Surface Atomic Active Sites of Carbon-Supported Co3 O4 Nanocrystals via High-Resolution Phase Restoration.

Authors:  Ofentse A Makgae; Arthur N Moya; Tumelo N Phaahlamohlaka; Chen Huang; Neil J Coville; Angus I Kirkland; Emanuela Liberti
Journal:  Chemphyschem       Date:  2022-06-01       Impact factor: 3.520

Review 2.  Advanced electron crystallography through model-based imaging.

Authors:  Sandra Van Aert; Annick De Backer; Gerardo T Martinez; Arnold J den Dekker; Dirk Van Dyck; Sara Bals; Gustaaf Van Tendeloo
Journal:  IUCrJ       Date:  2016-01-01       Impact factor: 4.769

3.  A streaming multi-GPU implementation of image simulation algorithms for scanning transmission electron microscopy.

Authors:  Alan Pryor; Colin Ophus; Jianwei Miao
Journal:  Adv Struct Chem Imaging       Date:  2017-10-25

4.  Parakeet: a digital twin software pipeline to assess the impact of experimental parameters on tomographic reconstructions for cryo-electron tomography.

Authors:  James M Parkhurst; Maud Dumoux; Mark Basham; Daniel Clare; C Alistair Siebert; Trond Varslot; Angus Kirkland; James H Naismith; Gwyndaf Evans
Journal:  Open Biol       Date:  2021-10-27       Impact factor: 6.411

  4 in total

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