Literature DB >> 25965574

Cross-Species Genomics Identifies TAF12, NFYC, and RAD54L as Choroid Plexus Carcinoma Oncogenes.

Yiai Tong1, Diana Merino2, Birgit Nimmervoll1, Kirti Gupta3, Yong-Dong Wang4, David Finkelstein4, James Dalton3, David W Ellison3, Xiaotu Ma4, Jinghui Zhang4, David Malkin5, Richard J Gilbertson6.   

Abstract

Choroid plexus carcinomas (CPCs) are poorly understood and frequently lethal brain tumors with few treatment options. Using a mouse model of the disease and a large cohort of human CPCs, we performed a cross-species, genome-wide search for oncogenes within syntenic regions of chromosome gain. TAF12, NFYC, and RAD54L co-located on human chromosome 1p32-35.3 and mouse chromosome 4qD1-D3 were identified as oncogenes that are gained in tumors in both species and required for disease initiation and progression. TAF12 and NFYC are transcription factors that regulate the epigenome, whereas RAD54L plays a central role in DNA repair. Our data identify a group of concurrently gained oncogenes that cooperate in the formation of CPC and reveal potential avenues for therapy.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 25965574      PMCID: PMC4458854          DOI: 10.1016/j.ccell.2015.04.005

Source DB:  PubMed          Journal:  Cancer Cell        ISSN: 1535-6108            Impact factor:   31.743


  47 in total

Review 1.  The choroid plexus and cerebrospinal fluid: emerging roles in development, disease, and therapy.

Authors:  Maria K Lehtinen; Christopher S Bjornsson; Susan M Dymecki; Richard J Gilbertson; David M Holtzman; Edwin S Monuki
Journal:  J Neurosci       Date:  2013-11-06       Impact factor: 6.167

2.  ATM- and ATR-mediated phosphorylation of XRCC3 regulates DNA double-strand break-induced checkpoint activation and repair.

Authors:  Kumar Somyajit; Shivakumar Basavaraju; Ralph Scully; Ganesh Nagaraju
Journal:  Mol Cell Biol       Date:  2013-02-25       Impact factor: 4.272

3.  The architecture of human general transcription factor TFIID core complex.

Authors:  Christoph Bieniossek; Gabor Papai; Christiane Schaffitzel; Frederic Garzoni; Maxime Chaillet; Elisabeth Scheer; Petros Papadopoulos; Laszlo Tora; Patrick Schultz; Imre Berger
Journal:  Nature       Date:  2013-01-06       Impact factor: 49.962

4.  Rad54 functions as a heteroduplex DNA pump modulated by its DNA substrates and Rad51 during D loop formation.

Authors:  William Douglass Wright; Wolf-Dietrich Heyer
Journal:  Mol Cell       Date:  2014-01-30       Impact factor: 17.970

5.  Sequence-specific transcription factor NF-Y displays histone-like DNA binding and H2B-like ubiquitination.

Authors:  Marco Nardini; Nerina Gnesutta; Giacomo Donati; Raffaella Gatta; Claudia Forni; Andrea Fossati; Clemens Vonrhein; Dino Moras; Christophe Romier; Martino Bolognesi; Roberto Mantovani
Journal:  Cell       Date:  2013-01-17       Impact factor: 41.582

6.  Choroid plexus papilloma in a girl with hypomelanosis of Ito.

Authors:  Ryoma Morigaki; Kyong-Hon Pooh; Kenji Shouno; Hidekazu Taniguchi; Shouichi Endo; Yoshinobu Nakagawa
Journal:  J Neurosurg Pediatr       Date:  2012-07-13       Impact factor: 2.375

7.  Novel mutations target distinct subgroups of medulloblastoma.

Authors:  Giles Robinson; Matthew Parker; Tanya A Kranenburg; Charles Lu; Xiang Chen; Li Ding; Timothy N Phoenix; Erin Hedlund; Lei Wei; Xiaoyan Zhu; Nader Chalhoub; Suzanne J Baker; Robert Huether; Richard Kriwacki; Natasha Curley; Radhika Thiruvenkatam; Jianmin Wang; Gang Wu; Michael Rusch; Xin Hong; Jared Becksfort; Pankaj Gupta; Jing Ma; John Easton; Bhavin Vadodaria; Arzu Onar-Thomas; Tong Lin; Shaoyi Li; Stanley Pounds; Steven Paugh; David Zhao; Daisuke Kawauchi; Martine F Roussel; David Finkelstein; David W Ellison; Ching C Lau; Eric Bouffet; Tim Hassall; Sridharan Gururangan; Richard Cohn; Robert S Fulton; Lucinda L Fulton; David J Dooling; Kerri Ochoa; Amar Gajjar; Elaine R Mardis; Richard K Wilson; James R Downing; Jinghui Zhang; Richard J Gilbertson
Journal:  Nature       Date:  2012-08-02       Impact factor: 49.962

8.  Cross-species array comparative genomic hybridization identifies novel oncogenic events in zebrafish and human embryonal rhabdomyosarcoma.

Authors:  Eleanor Y Chen; Kimberly P Dobrinski; Kim H Brown; Ryan Clagg; Elena Edelman; Myron S Ignatius; Jin Yun Helen Chen; Jillian Brockmann; G Petur Nielsen; Sridhar Ramaswamy; Charles Keller; Charles Lee; David M Langenau
Journal:  PLoS Genet       Date:  2013-08-29       Impact factor: 5.917

9.  Signatures of mutational processes in human cancer.

Authors:  Ludmil B Alexandrov; Serena Nik-Zainal; David C Wedge; Samuel A J R Aparicio; Sam Behjati; Andrew V Biankin; Graham R Bignell; Niccolò Bolli; Ake Borg; Anne-Lise Børresen-Dale; Sandrine Boyault; Birgit Burkhardt; Adam P Butler; Carlos Caldas; Helen R Davies; Christine Desmedt; Roland Eils; Jórunn Erla Eyfjörd; John A Foekens; Mel Greaves; Fumie Hosoda; Barbara Hutter; Tomislav Ilicic; Sandrine Imbeaud; Marcin Imielinski; Marcin Imielinsk; Natalie Jäger; David T W Jones; David Jones; Stian Knappskog; Marcel Kool; Sunil R Lakhani; Carlos López-Otín; Sancha Martin; Nikhil C Munshi; Hiromi Nakamura; Paul A Northcott; Marina Pajic; Elli Papaemmanuil; Angelo Paradiso; John V Pearson; Xose S Puente; Keiran Raine; Manasa Ramakrishna; Andrea L Richardson; Julia Richter; Philip Rosenstiel; Matthias Schlesner; Ton N Schumacher; Paul N Span; Jon W Teague; Yasushi Totoki; Andrew N J Tutt; Rafael Valdés-Mas; Marit M van Buuren; Laura van 't Veer; Anne Vincent-Salomon; Nicola Waddell; Lucy R Yates; Jessica Zucman-Rossi; P Andrew Futreal; Ultan McDermott; Peter Lichter; Matthew Meyerson; Sean M Grimmond; Reiner Siebert; Elías Campo; Tatsuhiro Shibata; Stefan M Pfister; Peter J Campbell; Michael R Stratton
Journal:  Nature       Date:  2013-08-14       Impact factor: 49.962

10.  C11orf95-RELA fusions drive oncogenic NF-κB signalling in ependymoma.

Authors:  Matthew Parker; Kumarasamypet M Mohankumar; Chandanamali Punchihewa; Ricardo Weinlich; James D Dalton; Yongjin Li; Ryan Lee; Ruth G Tatevossian; Timothy N Phoenix; Radhika Thiruvenkatam; Elsie White; Bo Tang; Wilda Orisme; Kirti Gupta; Michael Rusch; Xiang Chen; Yuxin Li; Panduka Nagahawhatte; Erin Hedlund; David Finkelstein; Gang Wu; Sheila Shurtleff; John Easton; Kristy Boggs; Donald Yergeau; Bhavin Vadodaria; Heather L Mulder; Jared Becksfort; Jared Becksford; Pankaj Gupta; Robert Huether; Jing Ma; Guangchun Song; Amar Gajjar; Thomas Merchant; Frederick Boop; Amy A Smith; Li Ding; Charles Lu; Kerri Ochoa; David Zhao; Robert S Fulton; Lucinda L Fulton; Elaine R Mardis; Richard K Wilson; James R Downing; Douglas R Green; Jinghui Zhang; David W Ellison; Richard J Gilbertson
Journal:  Nature       Date:  2014-02-19       Impact factor: 49.962

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  30 in total

1.  DDX3X Suppresses the Susceptibility of Hindbrain Lineages to Medulloblastoma.

Authors:  Deanna M Patmore; Amir Jassim; Erica Nathan; Reuben J Gilbertson; Daniel Tahan; Nadin Hoffmann; Yiai Tong; Kyle S Smith; Thirumala-Devi Kanneganti; Hiromichi Suzuki; Michael D Taylor; Paul Northcott; Richard J Gilbertson
Journal:  Dev Cell       Date:  2020-06-17       Impact factor: 12.270

Review 2.  Development and functions of the choroid plexus-cerebrospinal fluid system.

Authors:  Melody P Lun; Edwin S Monuki; Maria K Lehtinen
Journal:  Nat Rev Neurosci       Date:  2015-07-15       Impact factor: 34.870

3.  Myc and Loss of p53 Cooperate to Drive Formation of Choroid Plexus Carcinoma.

Authors:  Jun Wang; Diana M Merino; Nicholas Light; Brian L Murphy; Yong-Dong Wang; Xiaohui Guo; Andrew P Hodges; Lianne Q Chau; Kun-Wei Liu; Girish Dhall; Shahab Asgharzadeh; Erin N Kiehna; Ryan J Shirey; Kim D Janda; Michael D Taylor; David Malkin; David W Ellison; Scott R VandenBerg; Charles G Eberhart; Rosalie C Sears; Martine F Roussel; Richard J Gilbertson; Robert J Wechsler-Reya
Journal:  Cancer Res       Date:  2019-03-18       Impact factor: 12.701

4.  Establishing a Preclinical Multidisciplinary Board for Brain Tumors.

Authors:  Birgit V Nimmervoll; Nidal Boulos; Brandon Bianski; Jason Dapper; Michael DeCuypere; Anang Shelat; Sabrina Terranova; Hope E Terhune; Amar Gajjar; Yogesh T Patel; Burgess B Freeman; Arzu Onar-Thomas; Clinton F Stewart; Martine F Roussel; R Kipling Guy; Thomas E Merchant; Christopher Calabrese; Karen D Wright; Richard J Gilbertson
Journal:  Clin Cancer Res       Date:  2018-01-04       Impact factor: 12.531

5.  A new genetically engineered mouse model of choroid plexus carcinoma.

Authors:  Salsabiel El Nagar; Frederique Zindy; Charlotte Moens; Luc Martin; Damien Plassard; Martine F Roussel; Thomas Lamonerie; Nathalie Billon
Journal:  Biochem Biophys Res Commun       Date:  2018-01-12       Impact factor: 3.575

6.  Decreased FOXJ1 expression and its ciliogenesis programme in aggressive ependymoma and choroid plexus tumours.

Authors:  Malak S Abedalthagafi; Michael P Wu; Parker H Merrill; Ziming Du; Terri Woo; Shu-Hsien Sheu; Shelley Hurwitz; Keith L Ligon; Sandro Santagata
Journal:  J Pathol       Date:  2016-03       Impact factor: 7.996

7.  Diverse, Biologically Relevant, and Targetable Gene Rearrangements in Triple-Negative Breast Cancer and Other Malignancies.

Authors:  Timothy M Shaver; Brian D Lehmann; J Scott Beeler; Chung-I Li; Zhu Li; Hailing Jin; Thomas P Stricker; Yu Shyr; Jennifer A Pietenpol
Journal:  Cancer Res       Date:  2016-05-26       Impact factor: 12.701

8.  Overexpression screens identify conserved dosage chromosome instability genes in yeast and human cancer.

Authors:  Supipi Duffy; Hok Khim Fam; Yi Kan Wang; Erin B Styles; Jung-Hyun Kim; J Sidney Ang; Tejomayee Singh; Vladimir Larionov; Sohrab P Shah; Brenda Andrews; Cornelius F Boerkoel; Philip Hieter
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-22       Impact factor: 11.205

9.  Prognostic significance of epigenetic regulatory gene expression in patients with non-small-cell lung cancer.

Authors:  Zegui Tu; Xiancheng Chen; Tian Tian; Guo Chen; Meijuan Huang
Journal:  Aging (Albany NY)       Date:  2021-02-26       Impact factor: 5.682

10.  Mice Expressing Myc in Neural Precursors Develop Choroid Plexus and Ciliary Body Tumors.

Authors:  Morgan L Shannon; Ryann M Fame; Kevin F Chau; Neil Dani; Monica L Calicchio; Gwenaelle S Géléoc; Hart G W Lidov; Sanda Alexandrescu; Maria K Lehtinen
Journal:  Am J Pathol       Date:  2018-03-13       Impact factor: 4.307

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