Literature DB >> 25965503

A coarse-grain force-field for xylan and its interaction with cellulose.

Liang Li1, Patrick Pérré2, Xavier Frank3, Karim Mazeau4.   

Abstract

We have built a coarse-grain (CG) model describing xylan and its interaction with crystalline cellulose surfaces. Each xylosyl or glucosyl unit was represented by a single grain. Our calculations rely on force-field parameters adapted from the atomistic description of short xylan fragments and their adsorption on cellulose. This CG model was first validated for xylan chains both isolated and in the bulk where a good match was found with its atomistic counterpart as well as with experimental measurements. A similar agreement was also found when short xylan fragments were adsorbed on the (110) surface of crystalline cellulose. The CG model, which was extended to the (100) and (1-10) surfaces, revealed that the adsorbed xylan, which was essentially extended in the atomistic situation, could also adopt coiled structures, especially when laying on the hydrophobic cellulose surfaces.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Adsorption; Cellulose; Coarse grain; Composite; Interaction; Molecular dynamics; Xylan

Mesh:

Substances:

Year:  2015        PMID: 25965503     DOI: 10.1016/j.carbpol.2015.04.003

Source DB:  PubMed          Journal:  Carbohydr Polym        ISSN: 0144-8617            Impact factor:   9.381


  5 in total

1.  Biopolymer nanofibrils: structure, modeling, preparation, and applications.

Authors:  Shengjie Ling; Wenshuai Chen; Yimin Fan; Ke Zheng; Kai Jin; Haipeng Yu; Markus J Buehler; David L Kaplan
Journal:  Prog Polym Sci       Date:  2018-06-23       Impact factor: 29.190

2.  Irregular xylem 7 (IRX7) is required for anchoring seed coat mucilage in Arabidopsis.

Authors:  Ruibo Hu; Junling Li; Xuanwen Yang; Xun Zhao; Xiaoyu Wang; Qi Tang; Guo He; Gongke Zhou; Yingzhen Kong
Journal:  Plant Mol Biol       Date:  2016-06-22       Impact factor: 4.076

3.  Evolution of Xylan Substitution Patterns in Gymnosperms and Angiosperms: Implications for Xylan Interaction with Cellulose.

Authors:  Marta Busse-Wicher; An Li; Rodrigo L Silveira; Caroline S Pereira; Theodora Tryfona; Thiago C F Gomes; Munir S Skaf; Paul Dupree
Journal:  Plant Physiol       Date:  2016-06-20       Impact factor: 8.340

4.  Folding of xylan onto cellulose fibrils in plant cell walls revealed by solid-state NMR.

Authors:  Thomas J Simmons; Jenny C Mortimer; Oigres D Bernardinelli; Ann-Christin Pöppler; Steven P Brown; Eduardo R deAzevedo; Ray Dupree; Paul Dupree
Journal:  Nat Commun       Date:  2016-12-21       Impact factor: 14.919

5.  Xylan synthesized by Irregular Xylem 14 (IRX14) maintains the structure of seed coat mucilage in Arabidopsis.

Authors:  Ruibo Hu; Junling Li; Xiaoyu Wang; Xun Zhao; Xuanwen Yang; Qi Tang; Guo He; Gongke Zhou; Yingzhen Kong
Journal:  J Exp Bot       Date:  2016-02-01       Impact factor: 6.992

  5 in total

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