| Literature DB >> 25964814 |
Marta Stępień-Słodkowska1, Krzysztof Ficek1, Mariusz Kaczmarczyk2, Agnieszka Maciejewska-Karłowska1, Marek Sawczuk1, Agata Leońska-Duniec3, Miłosz Stępiński1, Paweł Ziętek4, Paweł Król5, Monika Chudecka1, Paweł Cięszczyk3.
Abstract
The purpose of this study was to examine the association of the BstUI RFLP C/T (rs 12722) and DpnII RFLP C/T (rs 13946) COL5A1 polymorphisms, individually and as haplotypes, with anterior cruciate ligament ruptures in recreational skiers. Subjects were 138 male recreational skiers with surgically diagnosed primary anterior cruciate ligament ruptures. The control group consisted of 183 apparently healthy male recreational skiers, who were without any self-reported history of ligament or tendon injury. DNA was extracted from buccal cells donated by the subjects and genotyping was carried out using real-time PCR. The genotype distributions for both polymorphisms met Hardy-Weinberg expectations in both groups. There were no significant differences in genotype distribution of allele frequencies of COL5A1 BstUI RFLP C/T and COL5A1 DpnII RFLP C/T polymorphisms between the ACL rupture and control groups. The T-T (BstUI RFLP T, DpnII RFLP T) haplotype was the most common (55.6%). The haplotype T-C was not present in any of the subjects. There was an underrepresentation tendency of the C-T haplotype in the study group compared to controls under recessive mode of inheritance. Higher frequency of the COL5A1 BstUI RFLP C/T and COL5A1DpnII RFLP C/T polymorphisms haplotype is associated with reduced risk of anterior cruciate ligament injury in a group of apparently healthy male recreational skiers.Entities:
Keywords: ACL rupture; collagen; polymorphisms; real-time polymerase chain reaction
Year: 2015 PMID: 25964814 PMCID: PMC4415823 DOI: 10.1515/hukin-2015-0011
Source DB: PubMed Journal: J Hum Kinet ISSN: 1640-5544 Impact factor: 2.193
Association between the presence of either COL5A1 BstUI RFLP (rs12722, C/T) or COL5A1 DpnII RFLP (rs13946, C/T) polymorphisms and incidence of ACL rupture
| SNP | Group | HWE | Genotype distribution | Allele frequency | OR (95%CI) | ||
|---|---|---|---|---|---|---|---|
| BstUI RFLPC/T | ACLR | 0.861 | CC: 24 (17%) | p 0.467 | T: 59% | 0.218 | 0.82 (0.59–1.14) |
| Control | 1 | CC: 39 (21%) | T: 54% | ||||
|
| |||||||
| DpnII RFLP C/T | ACLR | 1 | CC: 12 (9%) | p 0.393 | T: 71% | 0.846 | 0.97 (0.68–1.38) |
| Control | 0.077 | CC: 11 (6%) | T: 70% | ||||
p values correspond to genotype distribution and allele frequency.
OR correspond to the odds ratio for the incidence of ACL rupture.
ACLR: anterior cruciate ligament rupture; HWE: Hardy–Weinberg Equilibrium;
OR: odds ratio; CI: confident interval, pD and pR are two-sided Fisher’s exact test probabilities for dominant (CC+CT vs TT) and recessive (CC+CT vs TT) modes of inheritance of the minor allele (BstUI RFLP C/T, DpnII RFLP C/T), respectively.
Pair-wise linkage disequilibrium (LD) and inferred haplotype frequencies for COL5A1 BstUI RFLP C/T and DpnII RFLP C/T
| Gene | SNP1 | SNP2 | D
| r2 | Haplotypes
| |
|---|---|---|---|---|---|---|
| Haplotype | Frequency (%) | |||||
| BstUI RFLP C/T (rs12722) | DpnII RFLP C/T (rs13946) | 0.98[ | 0.52 | T-T | 56 | |
| C-C | 29 | |||||
| C-T | 15 | |||||
| T-C | 0.0 | |||||
| Total | 100.0 | |||||
D′ – the deviation of the observed frequency of a haplotype from the expected.
D′= 0.98 suggest on very high LD between COL5A1 BstUI RFLP C/T and COL5A1 DpnII RFLP C/T.
Haplotypes are in decreasing frequency.
p<0.0001
Haplotypes frequencies in ACLR and controls (under a recessive mode of haplotype inheritance)
| Haplotypes | Frequency (%) | Hap.score | ||||
|---|---|---|---|---|---|---|
|
| ||||||
| BstUI RFLP C/T | DpnII RFLP C/T | Combined ACLR and controls | ACLR | Controls | ||
| C | T | 14.6 | 11.9 | 16.7 | −1.689 | 0.091 |
| C | C | 29.3 | 29.3 | 29.3 | −0.046 | 0.962 |
| T | T | 55.5 | 58.6 | 53.1 | 1.350 | 0.176 |
ACLR - anterior cruciate ligament rupture group;
Hap. score, statistics score for haplotypes.