Literature DB >> 25959309

Degradation of Ndd1 by APC/C(Cdh1) generates a feed forward loop that times mitotic protein accumulation.

Julia Sajman1, Drora Zenvirth1, Mor Nitzan2, Hanah Margalit3, Kobi J Simpson-Lavy1, Yuval Reiss4, Itamar Cohen5, Tommer Ravid5, Michael Brandeis1.   

Abstract

Ndd1 activates the Mcm1-Fkh2 transcription factor to transcribe mitotic regulators. The anaphase-promoting complex/cyclosome activated by Cdh1 (APC/C(Cdh1)) mediates the degradation of proteins throughout G1. Here we show that the APC/C(Cdh1) ubiquitinates Ndd1 and mediates its degradation, and that APC/C(Cdh1) activity suppresses accumulation of Ndd1 targets. We confirm putative Ndd1 targets and identify novel ones, many of them APC/C(Cdh1) substrates. The APC/C(Cdh1) thus regulates these proteins in a dual manner—both pretranscriptionally and post-translationally, forming a multi-layered feedforward loop (FFL). We predict by mathematical modelling and verify experimentally that this FFL introduces a lag between APC/C(Cdh1) inactivation at the end of G1 and accumulation of genes transcribed by Ndd1 in G2. This regulation generates two classes of APC/C(Cdh1) substrates, early ones that accumulate in S and late ones that accumulate in G2. Our results show how the dual state APC/C(Cdh1) activity is converted into multiple outputs by interactions between its substrates.

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Year:  2015        PMID: 25959309     DOI: 10.1038/ncomms8075

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  70 in total

1.  Serial regulation of transcriptional regulators in the yeast cell cycle.

Authors:  I Simon; J Barnett; N Hannett; C T Harbison; N J Rinaldi; T L Volkert; J J Wyrick; J Zeitlinger; D K Gifford; T S Jaakkola; R A Young
Journal:  Cell       Date:  2001-09-21       Impact factor: 41.582

2.  Network motifs: simple building blocks of complex networks.

Authors:  R Milo; S Shen-Orr; S Itzkovitz; N Kashtan; D Chklovskii; U Alon
Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

3.  Degradation of Hof1 by SCF(Grr1) is important for actomyosin contraction during cytokinesis in yeast.

Authors:  Marc Blondel; Stéphane Bach; Sophie Bamps; Jeroen Dobbelaere; Philippe Wiget; Céline Longaretti; Yves Barral; Laurent Meijer; Matthias Peter
Journal:  EMBO J       Date:  2005-03-17       Impact factor: 11.598

4.  FoxM1 is degraded at mitotic exit in a Cdh1-dependent manner.

Authors:  Jamila Laoukili; Monica Alvarez-Fernandez; Marie Stahl; René H Medema
Journal:  Cell Cycle       Date:  2008-09-10       Impact factor: 4.534

5.  The proteolysis of mitotic cyclins in mammalian cells persists from the end of mitosis until the onset of S phase.

Authors:  M Brandeis; T Hunt
Journal:  EMBO J       Date:  1996-10-01       Impact factor: 11.598

6.  A 20S complex containing CDC27 and CDC16 catalyzes the mitosis-specific conjugation of ubiquitin to cyclin B.

Authors:  R W King; J M Peters; S Tugendreich; M Rolfe; P Hieter; M W Kirschner
Journal:  Cell       Date:  1995-04-21       Impact factor: 41.582

7.  Hsl1p, a Swe1p inhibitor, is degraded via the anaphase-promoting complex.

Authors:  J L Burton; M J Solomon
Journal:  Mol Cell Biol       Date:  2000-07       Impact factor: 4.272

8.  Cdc20 is essential for the cyclosome-mediated proteolysis of both Pds1 and Clb2 during M phase in budding yeast.

Authors:  H H Lim; P Y Goh; U Surana
Journal:  Curr Biol       Date:  1998-02-12       Impact factor: 10.834

9.  GPS-ARM: computational analysis of the APC/C recognition motif by predicting D-boxes and KEN-boxes.

Authors:  Zexian Liu; Fang Yuan; Jian Ren; Jun Cao; Yanhong Zhou; Qing Yang; Yu Xue
Journal:  PLoS One       Date:  2012-03-29       Impact factor: 3.240

10.  Inferring yeast cell cycle regulators and interactions using transcription factor activities.

Authors:  Young-Lyeol Yang; Jason Suen; Mark P Brynildsen; Simon J Galbraith; James C Liao
Journal:  BMC Genomics       Date:  2005-06-10       Impact factor: 3.969

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  9 in total

Review 1.  Create, activate, destroy, repeat: Cdk1 controls proliferation by limiting transcription factor activity.

Authors:  Jennifer A Benanti
Journal:  Curr Genet       Date:  2015-11-21       Impact factor: 3.886

2.  The cell-cycle transcriptional network generates and transmits a pulse of transcription once each cell cycle.

Authors:  Chun-Yi Cho; Christina M Kelliher; Steven B Haase
Journal:  Cell Cycle       Date:  2019-02-05       Impact factor: 4.534

3.  ChIP-exo analysis highlights Fkh1 and Fkh2 transcription factors as hubs that integrate multi-scale networks in budding yeast.

Authors:  Thierry D G A Mondeel; Petter Holland; Jens Nielsen; Matteo Barberis
Journal:  Nucleic Acids Res       Date:  2019-09-05       Impact factor: 16.971

4.  An APC/C-Cdh1 Biosensor Reveals the Dynamics of Cdh1 Inactivation at the G1/S Transition.

Authors:  Andrej Ondracka; Jonathan A Robbins; Frederick R Cross
Journal:  PLoS One       Date:  2016-07-13       Impact factor: 3.240

Review 5.  Insights into APC/C: from cellular function to diseases and therapeutics.

Authors:  Zhuan Zhou; Mingjing He; Anil A Shah; Yong Wan
Journal:  Cell Div       Date:  2016-07-13       Impact factor: 5.130

Review 6.  APC/C and retinoblastoma interaction: cross-talk of retinoblastoma protein with the ubiquitin proteasome pathway.

Authors:  Ajeena Ramanujan; Swati Tiwari
Journal:  Biosci Rep       Date:  2016-09-16       Impact factor: 3.840

Review 7.  Cyclin/Forkhead-mediated coordination of cyclin waves: an autonomous oscillator rationalizing the quantitative model of Cdk control for budding yeast.

Authors:  Matteo Barberis
Journal:  NPJ Syst Biol Appl       Date:  2021-12-13

8.  Activation of the Anaphase Promoting Complex Reverses Multiple Drug Resistant Cancer in a Canine Model of Multiple Drug Resistant Lymphoma.

Authors:  Terra G Arnason; Valerie MacDonald-Dickinson; Matthew Casey Gaunt; Gerald F Davies; Liubov Lobanova; Brett Trost; Zoe E Gillespie; Matthew Waldner; Paige Baldwin; Devon Borrowman; Hailey Marwood; Frederick S Vizeacoumar; Franco J Vizeacoumar; Christopher H Eskiw; Anthony Kusalik; Troy A A Harkness
Journal:  Cancers (Basel)       Date:  2022-08-30       Impact factor: 6.575

9.  Bayesian data integration for quantifying the contribution of diverse measurements to parameter estimates.

Authors:  Bram Thijssen; Tjeerd M H Dijkstra; Tom Heskes; Lodewyk F A Wessels
Journal:  Bioinformatics       Date:  2018-03-01       Impact factor: 6.937

  9 in total

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