Literature DB >> 25957695

A transcriptome resource for Antarctic krill (Euphausia superba Dana) exposed to short-term stress.

Maria João F Martins1, Asuncion Lago-Leston1, Antonio Anjos2, Carlos M Duarte3, Susana Agusti3, Ester A Serrão1, Gareth A Pearson4.   

Abstract

Euphausia superba is a keystone species in Antarctic food webs. However, the continued decrease in stock density raises concerns over the resilience and adaptive potential of krill to withstand the current rate of environmental change. We undertook a transcriptome-scale approach (454 pyrosequencing) as a baseline for future studies addressing the physiological response of krill to short-term food shortage and natural UV-B stress. The final assembly resulted in a total of 26,415 contigs, 39.8% of which were putatively annotated. Exploratory analyses indicate an overall reduction in protein synthesis under food shortage while UV stress resulted in the activation of photo-protective mechanisms.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  454 pyrosequencing; Food shortage; UV

Mesh:

Year:  2015        PMID: 25957695     DOI: 10.1016/j.margen.2015.04.008

Source DB:  PubMed          Journal:  Mar Genomics        ISSN: 1874-7787            Impact factor:   1.710


  4 in total

1.  De novo sequencing of the Antarctic krill (Euphausia superba) transcriptome to identify functional genes and molecular markers.

Authors:  Chunyan Ma; Hongyu Ma; Guodong Xu; Chunlei Feng; Lingbo Ma; Lumin Wang
Journal:  J Genet       Date:  2018-09       Impact factor: 1.166

2.  KrillDB: A de novo transcriptome database for the Antarctic krill (Euphausia superba).

Authors:  Gabriele Sales; Bruce E Deagle; Enrica Calura; Paolo Martini; Alberto Biscontin; Cristiano De Pittà; So Kawaguchi; Chiara Romualdi; Bettina Meyer; Rodolfo Costa; Simon Jarman
Journal:  PLoS One       Date:  2017-02-10       Impact factor: 3.240

3.  The Euphausia superba transcriptome database, SuperbaSE: An online, open resource for researchers.

Authors:  Benjamin J Hunt; Özge Özkaya; Nathaniel J Davies; Edward Gaten; Paul Seear; Charalambos P Kyriacou; Geraint Tarling; Ezio Rosato
Journal:  Ecol Evol       Date:  2017-06-28       Impact factor: 2.912

4.  A thorough annotation of the krill transcriptome offers new insights for the study of physiological processes.

Authors:  Ilenia Urso; Alberto Biscontin; Davide Corso; Cristiano Bertolucci; Chiara Romualdi; Cristiano De Pittà; Bettina Meyer; Gabriele Sales
Journal:  Sci Rep       Date:  2022-07-06       Impact factor: 4.996

  4 in total

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