Literature DB >> 25957511

TM7 detection in human microbiome: Are PCR primers and FISH probes specific enough?

Maria V Sizova1, Sebastian N Doerfert1, Ekaterina Gavrish1, Slava S Epstein2.   

Abstract

TM7 appears important and omnipresent because it is repeatedly detected by molecular techniques in diverse environments. Here we report that most of primers and FISH probes thought to be TM7-specific do hybridize with multiple species from oral and vaginal cavity. This calls for re-examination of TM7 distribution and abundance.
Copyright © 2015. Published by Elsevier B.V.

Entities:  

Keywords:  Microbial cultivation; Oral microbiome; TM7

Mesh：

Substances：

Year:  2015        PMID： 25957511      PMCID： PMC4492686          DOI： 10.1016/j.mimet.2015.05.005

Source DB:  PubMed          Journal:  J Microbiol Methods        ISSN： 0167-7012            Impact factor:   2.363


  12 in total

1.  Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth.

Authors:  Yann Marcy; Cleber Ouverney; Elisabeth M Bik; Tina Lösekann; Natalia Ivanova; Hector Garcia Martin; Ernest Szeto; Darren Platt; Philip Hugenholtz; David A Relman; Stephen R Quake
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-09       Impact factor: 11.205

2.  16S ribosomal DNA amplification for phylogenetic study.

Authors:  W G Weisburg; S M Barns; D A Pelletier; D J Lane
Journal:  J Bacteriol       Date:  1991-01       Impact factor: 3.490

3.  Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle.

Authors:  Xuesong He; Jeffrey S McLean; Anna Edlund; Shibu Yooseph; Adam P Hall; Su-Yang Liu; Pieter C Dorrestein; Eduardo Esquenazi; Ryan C Hunter; Genhong Cheng; Karen E Nelson; Renate Lux; Wenyuan Shi
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-22       Impact factor: 11.205

4.  Axenic culture of a candidate division TM7 bacterium from the human oral cavity and biofilm interactions with other oral bacteria.

Authors:  Valeria Soro; Lindsay C Dutton; Susan V Sprague; Angela H Nobbs; Anthony J Ireland; Jonathan R Sandy; Mark A Jepson; Massimo Micaroni; Peter R Splatt; David Dymock; Howard F Jenkinson
Journal:  Appl Environ Microbiol       Date:  2014-08-08       Impact factor: 4.792

5.  Prevalence of bacteria of division TM7 in human subgingival plaque and their association with disease.

Authors:  Mary M Brinig; Paul W Lepp; Cleber C Ouverney; Gary C Armitage; David A Relman
Journal:  Appl Environ Microbiol       Date:  2003-03       Impact factor: 4.792

6.  Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives.

Authors:  P Hugenholtz; G W Tyson; R I Webb; A M Wagner; L L Blackall
Journal:  Appl Environ Microbiol       Date:  2001-01       Impact factor: 4.792

7.  Stomatobaculum longum gen. nov., sp. nov., an obligately anaerobic bacterium from the human oral cavity.

Authors:  Maria V Sizova; Paul Muller; Nicolai Panikov; Manolis Mandalakis; Tine Hohmann; Amanda Hazen; William Fowle; Tanya Prozorov; Dennis A Bazylinski; Slava S Epstein
Journal:  Int J Syst Evol Microbiol       Date:  2012-07-27       Impact factor: 2.747

8.  Isolation and characterization of oligotrophic acido-tolerant methanogenic consortia from a Sphagnum peat bog.

Authors:  Maria V Sizova; Nicolai S Panikov; Tatiana P Tourova; Patrick W Flanagan
Journal:  FEMS Microbiol Ecol       Date:  2003-08-01       Impact factor: 4.194

9.  Intestinal TM7 bacterial phylogenies in active inflammatory bowel disease.

Authors:  Tanja Kuehbacher; Ateequr Rehman; Patricia Lepage; Stephan Hellmig; Ulrich R Fölsch; Stefan Schreiber; Stephan J Ott
Journal:  J Med Microbiol       Date:  2008-12       Impact factor: 2.472

10.  In search of an uncultured human-associated TM7 bacterium in the environment.

Authors:  Jorge M Dinis; David E Barton; Jamsheed Ghadiri; Deepa Surendar; Kavitha Reddy; Fernando Velasquez; Carol L Chaffee; Mei-Chong Wendy Lee; Helen Gavrilova; Hazel Ozuna; Samuel A Smits; Cleber C Ouverney
Journal:  PLoS One       Date:  2011-06-20       Impact factor: 3.240
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  5 in total

Review 1.  Candidate Phyla Radiation, an Underappreciated Division of the Human Microbiome, and Its Impact on Health and Disease.

Authors:  Sabrina Naud; Ahmad Ibrahim; Camille Valles; Mohamad Maatouk; Fadi Bittar; Maryam Tidjani Alou; Didier Raoult
Journal:  Clin Microbiol Rev       Date:  2022-06-06       Impact factor: 50.129

2.  Specificities and Efficiencies of Primers Targeting Candidatus Phylum Saccharibacteria in Activated Sludge.

Authors:  Ryota Takenaka; Yoshiteru Aoi; Noriatsu Ozaki; Akiyoshi Ohashi; Tomonori Kindaichi
Journal:  Materials (Basel)       Date:  2018-07-03       Impact factor: 3.623

3.  Adapted Protocol for Saccharibacteria Cocultivation: Two New Members Join the Club of Candidate Phyla Radiation.

Authors:  Ahmad Ibrahim; Mohamad Maatouk; Andriamiharimamy Rajaonison; Rita Zgheib; Gabriel Haddad; Jacques Bou Khalil; Didier Raoult; Fadi Bittar
Journal:  Microbiol Spectr       Date:  2021-12-22

4.  The AIM2 inflammasome is a central regulator of intestinal homeostasis through the IL-18/IL-22/STAT3 pathway.

Authors:  Rojo A Ratsimandresy; Mohanalaxmi Indramohan; Andrea Dorfleutner; Christian Stehlik
Journal:  Cell Mol Immunol       Date:  2016-08-15       Impact factor: 11.530

5.  Isolation and cultivation of candidate phyla radiation Saccharibacteria (TM7) bacteria in coculture with bacterial hosts.

Authors:  Pallavi P Murugkar; Andrew J Collins; Tsute Chen; Floyd E Dewhirst
Journal:  J Oral Microbiol       Date:  2020-09-06       Impact factor: 5.474
  5 in total

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