Literature DB >> 25956164

Thermodynamics of antibody-antigen interaction revealed by mutation analysis of antibody variable regions.

Hiroki Akiba1, Kouhei Tsumoto2.   

Abstract

Antibodies (immunoglobulins) bind specific molecules (i.e. antigens) with high affinity and specificity. In order to understand their mechanisms of recognition, interaction analysis based on thermodynamic and kinetic parameters, as well as structure determination is crucial. In this review, we focus on mutational analysis which gives information about the role of each amino acid residue in antibody-antigen interaction. Taking anti-hen egg lysozyme antibodies and several anti-small molecule antibodies, the energetic contribution of hot-spot and non-hot-spot residues is discussed in terms of thermodynamics. Here, thermodynamics of the contribution from aromatic, charged and hydrogen bond-forming amino acids are discussed, and their different characteristics have been elucidated. The information gives fundamental understanding of the antibody-antigen interaction. Furthermore, the consequences of antibody engineering are analysed from thermodynamic viewpoints: humanization to reduce immunogenicity and rational design to improve affinity. Amino acid residues outside hot-spots in the interface play important roles in these cases, and thus thermodynamic and kinetic parameters give much information about the antigen recognition. Thermodynamic analysis of mutant antibodies thus should lead to advanced strategies to design and select antibodies with high affinity.
© The Authors 2015. Published by Oxford University Press on behalf of the Japanese Biochemical Society. All rights reserved.

Entities:  

Keywords:  interaction; isothermal titration calorimetry; kinetics; protein structure; thermodynamics

Mesh:

Substances:

Year:  2015        PMID: 25956164     DOI: 10.1093/jb/mvv049

Source DB:  PubMed          Journal:  J Biochem        ISSN: 0021-924X            Impact factor:   3.387


  9 in total

1.  Protein charge determination and implications for interactions in cell extracts.

Authors:  Ciara Kyne; Kiara Jordon; Dana I Filoti; Thomas M Laue; Peter B Crowley
Journal:  Protein Sci       Date:  2016-12-01       Impact factor: 6.725

2.  Probing the Kinetic and Thermodynamic Fingerprints of Anti-EGF Nanobodies by Surface Plasmon Resonance.

Authors:  Salvador Guardiola; Monica Varese; Marta Taulés; Mireia Díaz-Lobo; Jesús García; Ernest Giralt
Journal:  Pharmaceuticals (Basel)       Date:  2020-06-26

3.  Exploring designability of electrostatic complementarity at an antigen-antibody interface directed by mutagenesis, biophysical analysis, and molecular dynamics simulations.

Authors:  Kouhei Yoshida; Daisuke Kuroda; Masato Kiyoshi; Makoto Nakakido; Satoru Nagatoishi; Shinji Soga; Hiroki Shirai; Kouhei Tsumoto
Journal:  Sci Rep       Date:  2019-03-14       Impact factor: 4.379

4.  Antibody-mediated biorecognition of myelin oligodendrocyte glycoprotein: computational evidence of demyelination-related epitopes.

Authors:  Jéssica Cristiane Magalhães Ierich; Doralina Guimarães Brum; Ariana de Souza Moraes; Akemi Martins Higa; Pâmela Soto Garcia; Celina Massumi Miyazaki; Marystela Ferreira; Luís Antonio Peroni; Guedmiller Souza de Oliveira; Eduardo de Faria Franca; Luiz Carlos Gomide Freitas; Fabio Lima Leite
Journal:  Sci Rep       Date:  2019-02-14       Impact factor: 4.379

5.  Mutation of Framework Residue H71 Results in Different Antibody Paratope States in Solution.

Authors:  Monica L Fernández-Quintero; Katharina B Kroell; Florian Hofer; Jakob R Riccabona; Klaus R Liedl
Journal:  Front Immunol       Date:  2021-03-02       Impact factor: 7.561

6.  One-Step Homogeneous Immunoassay for the Detection of Influenza Virus Using Switching Peptide and Graphene Quencher.

Authors:  Hong-Rae Kim; Ji-Hong Bong; Tae-Hun Kim; Seung-Shick Shin; Min-Jung Kang; Won-Bo Shim; Do Young Lee; Dong Hee Son; Jae-Chul Pyun
Journal:  Biochip J       Date:  2022-07-27       Impact factor: 4.229

7.  Structural and thermodynamic basis for the recognition of the substrate-binding cleft on hen egg lysozyme by a single-domain antibody.

Authors:  Hiroki Akiba; Hiroko Tamura; Masato Kiyoshi; Saeko Yanaka; Kenji Sugase; Jose M M Caaveiro; Kouhei Tsumoto
Journal:  Sci Rep       Date:  2019-10-29       Impact factor: 4.379

8.  Generation of a Novel High-Affinity Antibody Binding to PCSK9 Catalytic Domain with Slow Dissociation Rate by CDR-Grafting, Alanine Scanning and Saturated Site-Directed Mutagenesis for Favorably Treating Hypercholesterolemia.

Authors:  Zhengli Bai; Menglong Xu; Ying Mei; Tuo Hu; Panpan Zhang; Manman Chen; Wenxiu Lv; Chenchen Lu; Shuhua Tan
Journal:  Biomedicines       Date:  2021-11-27

9.  Novel rapid immunohistochemistry using an alternating current electric field identifies Rac and Cdc42 activation in human colon cancer FFPE tissues.

Authors:  Masumi Tsuda; Runa Horio; Lei Wang; Tomoko Takenami; Jun Moriya; Jun Suzuka; Hirokazu Sugino; Zenichi Tanei; Mishie Tanino; Shinya Tanaka
Journal:  Sci Rep       Date:  2022-02-02       Impact factor: 4.379

  9 in total

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