| Literature DB >> 25954915 |
Guang Yang1, Li-Ping Zou1, Jing Wang1, Xiu-Yu Shi1, Xiao-Fan Yang1, Bin Wang1, Yu-Jie Liu1, Yan-Hong Sun2, Fei-Yong Jia3.
Abstract
While >200 types of etiologies have been shown to be involved in the pathogenesis of infantile spasms, the pathophysiology of infantile spasms remains largely elusive. Pre-natal stress and hypothalamic-pituitary-adrenal axis dysfunction were shown to be involved in the development of infantile spasms. To test the genetic association between the CRHR1 gene, which encodes the corticotrophin-releasing hormone (CRH) receptor, and infantile spasms, five single nucleotide polymorphisms (SNPs) in the CRHR1 gene were genotyped in a sample set of 128 cases with infantile spasms and 131 healthy controls. Correlation analysis was performed on the genotyped data. Under the assumption of the dominant model, the selected five SNPs, rs4458044, rs171440, rs17689966, rs28364026 and rs242948, showed no association with the risk of infantile spasms and the effectiveness of adrenocorticotropic hormone treatment. In addition, subsequent haplotype analysis suggested none of them was associated with infantile spasms. In conclusion, the experimental results of the present study suggested no association between the CRHR1 gene and infantile spasms in a Chinese population.Entities:
Mesh:
Substances:
Year: 2015 PMID: 25954915 PMCID: PMC4464474 DOI: 10.3892/mmr.2015.3751
Source DB: PubMed Journal: Mol Med Rep ISSN: 1791-2997 Impact factor: 2.952
Distribution of selected variables in cases (n=128) and controls (n=131).
| Variable | Cases | Controls | P-value |
|---|---|---|---|
| Gender | 0.79 | ||
| Male, n (%) | 83 (64.8) | 87 (66.4) | |
| Female, n (%) | 45 (35.2) | 44 (33.6) | |
| Age (months) | 6.8±2.9 | 7.5±3.7 | 0.88 |
| ACTH responsiveness | |||
| Response (n) | 62 | 63.9 | |
| No response (n) | 35 | 36.1 | |
| Etiology | |||
| Symptomatic (n) | 79 | 70.5 | |
| Cryptogenic (n) | 33 | 29.5 |
Age is expressed as the mean ± standard deviation.
Two-sided χ2 test;
independent-samples T test. ACTH, adrenocorticotropic hormone.
Primer information of NR3C1 for snapshot assay.
| rs number | Direction | Primer sequence | Tm (°C) | Product size (bp) |
|---|---|---|---|---|
| rs171440 | Forward | GGATGGGTCTGTTCCAGGGTGT | 66.09 | 214 |
| rs4458044 | Forward | TGGGCTCCCCTCTTCTGTGAG | 65.66 | 106 |
| rs17689966 | Forward | CCTTCTGCCAGGGTTGGAATTG | 64.63 | 212 |
| rs28364026 | Forward | CTGCCTGTGGAGGTGACCTGTT | 63.68 | 158 |
| rs242948 | Forward | ATGGGTCAGGGGAAGGAACAAA | 64.59 | 176 |
Information on five genotyped SNPs of CRHR1 (OMIMa no. 122561; locus 17ql2-q22).
| NCBI SNP ID | Chromosome position | Location in gene region | Base change | MAF
| P-value | P-value for HWE | Genotyping rate (%) | ||
|---|---|---|---|---|---|---|---|---|---|
| Database | Cases | Controls | |||||||
| rs4458044 | 43873727 | intron | G>C | 0.15 | 0.305 | 0.294 | 0.79 | 0.58 | 100 |
| rs171440 | 43893487 | intron | C>T | 0.267 | 0.125 | 0.126 | 0.97 | 1 | 100 |
| rs17689966 | 43910455 | intron | G>A | 0.238 | 0.172 | 0.181 | 0.79 | 1 | 99.6 |
| rs28364026 | 43912294 | 3′UTR | G>A | 0.261 | 0.207 | 0.202 | 0.89 | 1 | 100 |
| rs242948 | 43913544 | 3′neargene | C>A | 0.227 | 0.172 | 0.164 | 0.81 | 0.94 | 100 |
http://www.ncbi.nlm.nih.gov/Omim;
SNP position according to NCBI dbSNP databases;
from dbSNP databases;
P-value for different distributions of alleles between cases and controls;
P<0.05, compared with the controls;
The frequency is Chinese Han in Beijing + Japanese in Tokyo. dbSNP, single nucleotide polymorphism database; OMIM, online Mendelian inheritance in man; MAF, minor allele frequency; NCBI, National Center for Biotechnology Information; HWE, Hardy-Weinberg equilibrium; UTR, untranslated region.
Genotypes of five single nucleotide polymorphisms of CRHR1 and their associations with infantile spasms.
| Genetic model | Genotype | Controls, n (%) | Cases, n (%) | P-value | Logistic regression | |
|---|---|---|---|---|---|---|
| OR (95% CI)c | P-valued | |||||
| rs4458044 | ||||||
| Co-dominant | GG | 67 (51.1) | 57 (44.5) | 0.13 | 1.00 | 0.14 |
| Dominant | GC+CC | 64 (48.9) | 71 (55.5) | 0.29 | 1.30 (0.80–2.12) | 0.29 |
| rs171440 | ||||||
| Co-dominant | AA | 100 (76.3) | 96 (75) | 0.33 | 1.00 | 0.64 |
| Dominant | AG+GG | 31 (23.7) | 32 ( | 0.80 | 1.08 (0.61–1.91) | 0.80 |
| rs17689966 | ||||||
| Co-dominant | AA | 87 (66.9) | 88 (68.8) | 0.78 | 1.00 | 0.77 |
| Dominant | AG+GG | 43 (33.1) | 40 (31.2) | 0.75 | 0.93 (0.55–1.57) | 0.78 |
| rs28364026 | ||||||
| Co-dominant | GG | 83 (63.4) | 79 (61.7) | 0.90 | 1.00 | 0.71 |
| Dominant | GA+AA | 48 (36.6) | 49 (38.3) | 0.79 | 1.08 (0.65–1.78) | 0.77 |
| rs242948 | ||||||
| Co-dominant | TT | 92 (70.2) | 88 (68.8) | 0.97 | 1.00 | 0.76 |
| Dominant | TG+GG | 39 (29.8) | 40 (31.2) | 0.80 | 1.08 (0.63–1.85) | 0.77 |
P-value for genotype frequencies in cases and controls using the two-sided χ2 test;
Adjusted by age and gender.
Figure 1Reconstructed linkage disequilibrium map using five single nucleotide polymorphisms of CRHR1. The haplotype block was determined using haploview software. rs numbers are stated on top, and the numbers in the squares represent the D’ values.
Association of haplotypes and diplotypes with risk of infantile spasms.
| Types | Controls, n (%) | Cases, n (%) | Logistic regression | |
|---|---|---|---|---|
| OR (95% CI) | P-value | |||
| Haplotypes | ||||
| AA | 214 (82) | 212 (82.8) | 1.00 | |
| AG | 15 (5.7) | 12 (4.7) | 0.82 (0.37–1.80) | 0.62 |
| GG | 32 (12.3) | 32 (12.5) | 1.01 (0.60–1.71) | 0.98 |
| Diplotypes | ||||
| AA/AA | 88 (67.2) | 88 (68.8) | 1.00 | |
| AA/AG | 12 (9.2) | 8 (6.3) | 0.68 (0.26–1.78) | 0.43 |
| AA/GG | 26 (19.8) | 28 (21.9) | 1.08 (0.59–2.00) | 0.80 |
| Others | 5 (3.8) | 4 ( | 0.80 (0.21–3.08) | 0.74 |
Adjusted by age and gender;
P-value from unconditional logistic regression analysis;
haplotypes and diplotypes were composed of two single nucleotide polymorphisms, rs171440 and rs17689966;
others: Diplotypes, AG/GG and GG/GG, with frequencies <0.03. OR, odds ratio; CI confidence interval.
Association of the effectiveness of ACTH and etiology of infantile spasms with single nucleotide polymorphisms of CRHR1.
| Genetic model | Genotype | ACTH
| P-value | Logistic regression | P-valuec | Etiology
| P-value | Logistic regression | P-valuec | ||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Effective n(%) | Ineffective n(%) | Symptomatic n(%) | Cryptogenic n(%) | ||||||||
| rs4458044 | |||||||||||
| Co-dominant | GG | 27 (43.5) | 16 (45.7) | 0.89 | 1.00 | 0.95 | 37 (46.8) | 15 (45.5) | 0.87 | 1.00 | 0.76 |
| Dominant | GC+CC | 35 (56.5) | 19 (54.3) | 0.84 | 0.93(0.40–2.16) | 0.87 | 42(53.1) | 18 (54.5) | 0.90 | 1.09(048–248) | 0.84 |
| rs171440 | |||||||||||
| Co-dominant | AA | 14 (22.6) | 9 (25.7) | 0.73 | 1.00 | 0.77 | 58 (73.4) | 26 (78.8) | 0.55 | 1.00 | 0.46 |
| rs17689966 | |||||||||||
| Co-dominant | AA | 45 (72.6) | 23 (65.7) | 0.23 | 1.00 | 0.29 | 53(67.1) | 24 (72.7) | 0.44 | 1.00 | 0.26 |
| Dominant | AG+GG | 17 (27.4) | 12 (34.3) | 0.48 | 1.35(0.55–3.32) | 0.59 | 26 (32.9) | 9 (27.3) | 0.57 | 0.68(0.27–1.72) | 0.42 |
| rs28364026 | |||||||||||
| Co-dominant | GG | 41 (66.1) | 19 (54.3) | 0.49 | 1.00 | 0.31 | 48 (60.8) | 21 (63.6) | 0.57 | 1.00 | 0.54 |
| Dominant | GA+AA | 21 (33.9) | 16 (45.7) | 0.25 | 1.66(0.79–3.89) | 0.25 | 31 (39.2) | 12 (36.9) | 0.78 | 0.87 (0.37–2.03) | 0.74 |
| rs242948 | |||||||||||
| Co-dominant | TT | 45 (72.6) | 23 (65.7) | 0.23 | 1.00 | 0.29 | 53(67.1) | 24 (72.7) | 0.44 | 1.00 | 0.26 |
| Dominant | TG+GG | 17 (27.4) | 12 (34.3) | 0.48 | 1.35(0.55–3.32) | 0.52 | 26 (32.9) | 9 (27.3) | 0.56 | 0.68(0.27–1.72) | 0.42 |
P-value for genotype frequencies in cases and controls using two-sided χ2 test;
adjusted by age and gender;
P-value from unconditional logistic regression analysis; OR, odds ratio; CI confidence interval; ACTH, adrenocorticotropic hormone.