Literature DB >> 25954347

A Semantic-based Approach for Exploring Consumer Health Questions Using UMLS.

Licong Cui1, Shiqiang Tao2, Guo-Qiang Zhang2.   

Abstract

NetWellness is a non-profit web service providing high quality health information. It has been in operation since 1995 with over 13 million visits per year by consumers across the world in recent years. Consumer questions in NetWellness have been answered by medical and health professional faculties at three Ohio partner universities: Case Western Reserve University, the Ohio State University, and University of Cincinnati. However, the resident interface in NetWellness is ineffective in searching existing questions that have already been carefully answered by experts in an easy-to-understand manner. In our previous work, we presented a Conjunctive Exploratory Navigation Interface (CENI) reusing NetWellness' 120 pre-defined health topics in assisting question retrieval. This paper presents a novel semantic-based search interface called Semantic Conjunctive Exploratory Navigation Interface (SCENI), using UMLS concepts as topics. 60,000 questions were tagged by UMLS Concept Unique Identifies (CUIs), with each question allowing multiple possible tags. Using a slightly modified 5-point Likert scale for relevance, SCENI reveals improved precision and relevance (precision: 93.47%, relevance: 4.31) in comparison to CENI using NetWellness' pre-defined topics alone (precision: 77.85%, relevance: 3.3) and NetWellness' resident search interface (precision: 50.62%, relevance: 1.97), on a set of sample queries.

Entities:  

Mesh:

Year:  2014        PMID: 25954347      PMCID: PMC4419919     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  9 in total

1.  Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

2.  Health information on the Internet: accessibility, quality, and readability in English and Spanish.

Authors:  G K Berland; M N Elliott; L S Morales; J I Algazy; R L Kravitz; M S Broder; D E Kanouse; J A Muñoz; J A Puyol; M Lara; K E Watkins; H Yang; E A McGlynn
Journal:  JAMA       Date:  2001 May 23-30       Impact factor: 56.272

3.  The Unified Medical Language System (UMLS): integrating biomedical terminology.

Authors:  Olivier Bodenreider
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

4.  An overview of MetaMap: historical perspective and recent advances.

Authors:  Alan R Aronson; François-Michel Lang
Journal:  J Am Med Inform Assoc       Date:  2010 May-Jun       Impact factor: 4.497

5.  Exploring and developing consumer health vocabularies.

Authors:  Qing T Zeng; Tony Tse
Journal:  J Am Med Inform Assoc       Date:  2005-10-12       Impact factor: 4.497

6.  Approaching equity in consumer health information delivery: NetWellness.

Authors:  T A Morris; J R Guard; S A Marine; L Schick; D Haag; G Tsipis; B Kaya; S Shoemaker
Journal:  J Am Med Inform Assoc       Date:  1997 Jan-Feb       Impact factor: 4.497

7.  Development and evaluation of a biomedical search engine using a predicate-based vector space model.

Authors:  Myungjae Kwak; Gondy Leroy; Jesse D Martinez; Jeffrey Harwell
Journal:  J Biomed Inform       Date:  2013-07-25       Impact factor: 6.317

8.  Evaluation of a novel Conjunctive Exploratory Navigation Interface for consumer health information: a crowdsourced comparative study.

Authors:  Licong Cui; Rebecca Carter; Guo-Qiang Zhang
Journal:  J Med Internet Res       Date:  2014-02-10       Impact factor: 5.428

9.  Multi-topic assignment for exploratory navigation of consumer health information in NetWellness using formal concept analysis.

Authors:  Licong Cui; Rong Xu; Zhihui Luo; Susan Wentz; Kyle Scarberry; Guo-Qiang Zhang
Journal:  BMC Med Inform Decis Mak       Date:  2014-08-03       Impact factor: 2.796

  9 in total
  8 in total

1.  COBE: A Conjunctive Ontology Browser and Explorer for Visualizing SNOMED CT Fragments.

Authors:  Mengmeng Sun; Wei Zhu; Shiqiang Tao; Licong Cui; Guo-Qiang Zhang
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05

2.  Automatic Extraction and Post-coordination of Spatial Relations in Consumer Language.

Authors:  Kirk Roberts; Laritza Rodriguez; Sonya E Shooshan; Dina Demner-Fushman
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05

3.  Web-based Interactive Visualization of Non-Lattice Subgraphs (WINS) in SNOMED CT.

Authors:  Wei Zhu; Shiqiang Tao; Licong Cui; Guo-Qiang Zhang
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2020-05-30

4.  Multi-topic assignment for exploratory navigation of consumer health information in NetWellness using formal concept analysis.

Authors:  Licong Cui; Rong Xu; Zhihui Luo; Susan Wentz; Kyle Scarberry; Guo-Qiang Zhang
Journal:  BMC Med Inform Decis Mak       Date:  2014-08-03       Impact factor: 2.796

5.  FEDRR: fast, exhaustive detection of redundant hierarchical relations for quality improvement of large biomedical ontologies.

Authors:  Guangming Xing; Guo-Qiang Zhang; Licong Cui
Journal:  BioData Min       Date:  2016-10-10       Impact factor: 2.522

6.  Exploring patient information needs in type 2 diabetes: A cross sectional study of questions.

Authors:  Colleen E Crangle; Colin Bradley; Paul F Carlin; Robert J Esterhay; Roy Harper; Patricia M Kearney; Vera J C McCarthy; Michael F McTear; Eileen Savage; Mark S Tuttle; Jonathan G Wallace
Journal:  PLoS One       Date:  2018-11-16       Impact factor: 3.240

7.  NEO: Systematic Non-Lattice Embedding of Ontologies for Comparing the Subsumption Relationship in SNOMED CT and in FMA Using MapReduce.

Authors:  Wei Zhu; Guo-Qiang Zhang; Shiqiang Tao; Mengmeng Sun; Licong Cui
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2015-03-25

8.  Triaging Patient Complaints: Monte Carlo Cross-Validation of Six Machine Learning Classifiers.

Authors:  Adel Elmessiry; William O Cooper; Thomas F Catron; Jan Karrass; Zhe Zhang; Munindar P Singh
Journal:  JMIR Med Inform       Date:  2017-07-31
  8 in total

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