Literature DB >> 25949530

Erratum to: a SNP profiling panel for sample tracking in whole-exome sequencing studies.

Reuben J Pengelly1, Jane Gibson1, Gaia Andreoletti1, Andrew Collins1, Christopher J Mattocks2, Sarah Ennis1.   

Abstract

This is an Erratum to Genome Medicine 2013, 5:89, highlighting an error in Table 1 of the original article. Please see related article: http://genomemedicine.com/content/5/9/89.[This corrects the article DOI: 10.1186/gm492.].

Entities:  

Year:  2015        PMID: 25949530      PMCID: PMC4422541          DOI: 10.1186/s13073-015-0163-1

Source DB:  PubMed          Journal:  Genome Med        ISSN: 1756-994X            Impact factor:   11.117


Erratum

It has come to our attention that there is an error in Table 1 of our article [1]. Within the ‘Alleles’ column, incorrect reference/alternate nucleotides have been given. This error is limited to this column, all other data and conclusions presented are correct. The corrected Table 1 is shown below.
Table 1

Optimised panel of identifying SNPs

Chromosome Position a dbSNP rsID Gene Alleles HapMap 3 AF
CEU CHB JPT YRI
1179520506rs1410592 NPHS2 A/G0.590.620.540.53
167861520rs2229546 IL12RB2 A/C0.640.360.440.58
2169789016rs497692 ABCB11 A/Gb 0.550.650.510.22
2227896976rs10203363 COL4A4 C/T0.460.440.360.57
34403767rs2819561 SUMF1 C/Tb 0.560.730.730.72
45749904rs4688963 EVC A/Gb 0.330.650.670.52
582834630rs309557 VCAN A/Gb 0.490.340.520.50
6146755140rs2942 GRM1 A/G0.540.490.550.47
748450157rs17548783 ABCA13 C/T0.460.720.530.48
894935937rs4735258 PDP1 C/T0.400.640.660.46
9100190780rs1381532 TDRD7 C/Tb 0.480.590.500.58
10100219314rs10883099 HPSE2 A/G0.520.520.530.62
1116133413rs4617548 SOX6 A/G0.520.650.610.51
12993930rs7300444 WNK1 C/T0.460.550.480.28
1339433606rs9532292 FREM2 A/G0.290.410.440.54
1450769717rs2297995 L2HGDH A/G0.550.650.670.59
1534528948rs4577050 SLC12A6 A/G0.680.750.630.32
1670303580rs2070203 AARS C/Tb 0.530.280.510.49
1771197748rs1037256 COG1 A/G0.500.670.650.56
1821413869rs9962023 LAMA3 C/T0.670.81c 0.750.51
1910267077rs2228611 DNMT1 A/Gb 0.470.730.560.48
206100088rs10373 FERMT1 C/Tb 0.540.310.350.58
2144323590rs4148973 NDUFV3 G/T0.650.330.380.73
2221141300rs4675 SERPIND1 C/T0.460.620.510.57

aPosition as defined in genome reference assembly GRCh37 (hg19).

bSNP alleles are defined on the negative strand to be consistent with dbSNP.

cAF marginally outside target range for candidate selection. Selected due to paucity of candidates on chromosome 18.

Optimised panel of identifying SNPs aPosition as defined in genome reference assembly GRCh37 (hg19). bSNP alleles are defined on the negative strand to be consistent with dbSNP. cAF marginally outside target range for candidate selection. Selected due to paucity of candidates on chromosome 18.
  1 in total

1.  A SNP profiling panel for sample tracking in whole-exome sequencing studies.

Authors:  Reuben J Pengelly; Jane Gibson; Gaia Andreoletti; Andrew Collins; Christopher J Mattocks; Sarah Ennis
Journal:  Genome Med       Date:  2013-09-27       Impact factor: 11.117

  1 in total
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