Literature DB >> 25945714

Structure of an ADP-ribosylation factor, ARF1, from Entamoeba histolytica bound to Mg(2+)-GDP.

Dmitry A Serbzhinskiy1, Matthew C Clifton1, Banumathi Sankaran2, Bart L Staker1, Thomas E Edwards1, Peter J Myler1.   

Abstract

Entamoeba histolytica is the etiological agent of amebiasis, a diarrheal disease which causes amoebic liver abscesses and amoebic colitis. Approximately 50 million people are infected worldwide with E. histolytica. With only 10% of infected people developing symptomatic amebiasis, there are still an estimated 100,000 deaths each year. Because of the emergence of resistant strains of the parasite, it is necessary to find a treatment which would be a proper response to this challenge. ADP-ribosylation factor (ARF) is a member of the ARF family of GTP-binding proteins. These proteins are ubiquitous in eukaryotic cells; they generally associate with cell membranes and regulate vesicular traffic and intracellular signalling. The crystal structure of ARF1 from E. histolytica has been determined bound to magnesium and GDP at 1.8 Å resolution. Comparison with other structures of eukaryotic ARF proteins shows a highly conserved structure and supports the interswitch toggle mechanism of communicating the conformational state to partner proteins.

Entities:  

Keywords:  ARFA1; GDP-ribosylation factor; SSGCID; Seattle Structural Genomics Center for Infectious Disease; signaling protein; small GTPase; structural genomics

Mesh:

Substances:

Year:  2015        PMID: 25945714      PMCID: PMC4427170          DOI: 10.1107/S2053230X15004677

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  26 in total

1.  Arf, Arl, Arp and Sar proteins: a family of GTP-binding proteins with a structural device for 'front-back' communication.

Authors:  Sebastiano Pasqualato; Louis Renault; Jacqueline Cherfils
Journal:  EMBO Rep       Date:  2002-11       Impact factor: 8.807

2.  Structural snapshots of the mechanism and inhibition of a guanine nucleotide exchange factor.

Authors:  Louis Renault; Bernard Guibert; Jacqueline Cherfils
Journal:  Nature       Date:  2003-12-04       Impact factor: 49.962

3.  Ligation-independent cloning of PCR products (LIC-PCR).

Authors:  C Aslanidis; P J de Jong
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

Review 4.  The guanine nucleotide-binding switch in three dimensions.

Authors:  I R Vetter; A Wittinghofer
Journal:  Science       Date:  2001-11-09       Impact factor: 47.728

Review 5.  Amebiasis.

Authors:  Bobbi S Pritt; C Graham Clark
Journal:  Mayo Clin Proc       Date:  2008-10       Impact factor: 7.616

6.  Integration, scaling, space-group assignment and post-refinement.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Selecting targets from eukaryotic parasites for structural genomics and drug discovery.

Authors:  Isabelle Q H Phan; Robin Stacy; Peter J Myler
Journal:  Methods Mol Biol       Date:  2014

9.  Immobilized metal-affinity chromatography protein-recovery screening is predictive of crystallographic structure success.

Authors:  Ryan Choi; Angela Kelley; David Leibly; Stephen Nakazawa Hewitt; Alberto Napuli; Wesley Van Voorhis
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-08-13

10.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21
View more
  10 in total

1.  Rickettsia prowazekii methionine aminopeptidase as a promising target for the development of antibacterial agents.

Authors:  Travis R Helgren; Congling Chen; Phumvadee Wangtrakuldee; Thomas E Edwards; Bart L Staker; Jan Abendroth; Banumathi Sankaran; Nicole A Housley; Peter J Myler; Jonathon P Audia; James R Horn; Timothy J Hagen
Journal:  Bioorg Med Chem       Date:  2016-11-10       Impact factor: 3.641

2.  Phosphorylation of eukaryotic initiation factor-2α in response to endoplasmic reticulum and nitrosative stress in the human protozoan parasite, Entamoeba histolytica.

Authors:  Heather A Walters; Brenda H Welter; William J Sullivan; Lesly A Temesvari
Journal:  Mol Biochem Parasitol       Date:  2019-09-27       Impact factor: 1.759

3.  Membrane skeletal association and post-translational allosteric regulation of Toxoplasma gondii GAPDH1.

Authors:  Rashmi Dubey; Bart L Staker; Ian T Foe; Matthew Bogyo; Peter J Myler; Huân M Ngô; Marc-Jan Gubbels
Journal:  Mol Microbiol       Date:  2016-12-23       Impact factor: 3.501

4.  Proteomic and Functional Analysis of the Effects of Quinoxaline Derivatives on Entamoeba histolytica.

Authors:  Rodolfo Gamaliel Avila-Bonilla; Ángel López-Sandoval; Jacqueline Soto-Sánchez; Laurence A Marchat; Gildardo Rivera; Oscar Medina-Contreras; Esther Ramírez-Moreno
Journal:  Front Cell Infect Microbiol       Date:  2022-06-27       Impact factor: 6.073

5.  The identification of inhibitory compounds of Rickettsia prowazekii methionine aminopeptidase for antibacterial applications.

Authors:  Travis R Helgren; Elif S Seven; Congling Chen; Thomas E Edwards; Bart L Staker; Jan Abendroth; Peter J Myler; James R Horn; Timothy J Hagen
Journal:  Bioorg Med Chem Lett       Date:  2018-03-15       Impact factor: 2.823

6.  Identification of P218 as a potent inhibitor of Mycobacterium ulcerans DHFR.

Authors:  Gustavo P Riboldi; Rachael Zigweid; Peter J Myler; Stephen J Mayclin; Rafael M Couñago; Bart L Staker
Journal:  RSC Med Chem       Date:  2020-10-22

7.  Crystal structure of an inorganic pyrophosphatase from Chlamydia trachomatis D/UW-3/Cx.

Authors:  Jasmine Maddy; Bart L Staker; Sandhya Subramanian; Jan Abendroth; Thomas E Edwards; Peter J Myler; Kevin Hybiske; Oluwatoyin A Asojo
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2022-02-28       Impact factor: 1.056

8.  Crystal structures of glutamyl-tRNA synthetase from Elizabethkingia anopheles and E. meningosepticum.

Authors:  Lauryn Brooks; Sandhya Subramanian; David M Dranow; Stephen J Mayclin; Peter J Myler; Oluwatoyin A Asojo
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2022-07-28       Impact factor: 1.072

9.  Recombinant protein of Haemonchus contortus small GTPase ADP-ribosylation factor 1 (HcARF1) modulate the cell mediated immune response in vitro.

Authors:  Javaid Ali Gadahi; Muhammad Ehsan; Shuai Wang; Zhenchao Zhang; Ruofeng Yan; Xiaokai Song; Lixin Xu; Xiangrui Li
Journal:  Oncotarget       Date:  2017-11-26

10.  Missense-depleted regions in population exomes implicate ras superfamily nucleotide-binding protein alteration in patients with brain malformation.

Authors:  Xiaoyan Ge; Henry Gong; Kevin Dumas; Jessica Litwin; Joanna J Phillips; Quinten Waisfisz; Marjan M Weiss; Yvonne Hendriks; Kyra E Stuurman; Stanley F Nelson; Wayne W Grody; Hane Lee; Pui-Yan Kwok; Joseph Tc Shieh
Journal:  NPJ Genom Med       Date:  2016-10-05       Impact factor: 8.617

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.