| Literature DB >> 25938934 |
Nydia Morales-Soto1, Morgen E Anyan2, Anne E Mattingly2, Chinedu S Madukoma2, Cameron W Harvey3, Mark Alber3, Eric Déziel4, Daniel B Kearns5, Joshua D Shrout6.
Abstract
Bacterial surface motility, such as swarming, is commonly examined in the laboratory using plate assays that necessitate specific concentrations of agar and sometimes inclusion of specific nutrients in the growth medium. The preparation of such explicit media and surface growth conditions serves to provide the favorable conditions that allow not just bacterial growth but coordinated motility of bacteria over these surfaces within thin liquid films. Reproducibility of swarm plate and other surface motility plate assays can be a major challenge. Especially for more "temperate swarmers" that exhibit motility only within agar ranges of 0.4%-0.8% (wt/vol), minor changes in protocol or laboratory environment can greatly influence swarm assay results. "Wettability", or water content at the liquid-solid-air interface of these plate assays, is often a key variable to be controlled. An additional challenge in assessing swarming is how to quantify observed differences between any two (or more) experiments. Here we detail a versatile two-phase protocol to prepare and image swarm assays. We include guidelines to circumvent the challenges commonly associated with swarm assay media preparation and quantification of data from these assays. We specifically demonstrate our method using bacteria that express fluorescent or bioluminescent genetic reporters like green fluorescent protein (GFP), luciferase (lux operon), or cellular stains to enable time-lapse optical imaging. We further demonstrate the ability of our method to track competing swarming species in the same experiment.Entities:
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Year: 2015 PMID: 25938934 PMCID: PMC4541456 DOI: 10.3791/52338
Source DB: PubMed Journal: J Vis Exp ISSN: 1940-087X Impact factor: 1.355
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| Overnight broth culture media | FAB plus 30 mM Glucose | FAB plus 30 mM Glucose | LB | CTT |
| Overnight broth culture incubation temperature | 37 °C | 37 °C | 37 °C | 30 hr at 30 °C |
| Swarm media | FAB | FAB minus (NH4)2SO4 | 2% (wt/vol) LB | CTT |
| Swarm media: additional components | 12 mM Glucosea | 10% (wt/vol) CAA, 12 mM Glucosea | n/a | SYTO® 64a |
| Agar type | Agar, Noble | Agar, Noble | Granulated agar | Agar, Noble Affymetrix |
| Agar concentration (wt/vol) | 0.45% | 0.45% | 0.60% | 1.50% |
| Swarm plate size | 60 mm | 60 mm | 100 mm | 150 mm |
| Media volume per plate | 7.5 ml | 7.5 ml | Hand Poured | Hand Poured |
| Swarm media setting/drying method | Hood; plates uncovered | Hood; plates uncovered | Benchtop; plates covered | Benchtop; plates covered |
| Swarm media setting/drying time | 30 min | 30 min | Overnight (20 -24 hr) | Overnight (20 -24 hr) |
| Swarm assay incubation temperature | 30 or 37 °C | 30 °C | 37 °C | 30 °C |
| Incubation for time lapse imaging | 30 °C for at least 4 hr | 30 °C for at least 4 hr | 37 °C for 2 hr | RT for 12 hr |
| Time-lapse capture length | 24 hr | 24 hr | 10 hr | 66 hr |
| Time-lapse setting | 1 frame/10 min | 1 frame/10 min | 1 frame/6 min | 1 frame/10 min |
| aAdded after autoclaving. |
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| Green Fluorescence Protein (GFP) | mCherry protein or Nile Red rhamnolipid stain | SYTO® 64 | Luciferase from |
| Excitation wavelength (nm) | 480 ± 10 | 540 ± 10 | 590 ± 10 | Off |
| Emission wavelength (nm) | 535 ± 17.5 | 600 ± 17.5 | 670 ± 17.5 | No filter |
| Exposure time (sec) | 30 | 60 | 60 | 240 |
| 4.0 | 4.0 | 2.5 | 1.1 | |
| FOV (mm) | 190 | 190 | 140 | 120 |
| Focal plane (mm) | 27.5 | 27.5 | 12.2 | 4 |
| Binning (pixels) | None | 2 x 2 | None | 8 x 8 |