Literature DB >> 25938813

Cooperative or Anticooperative: How Noncovalent Interactions Influence Each Other.

Soumen Saha1, G Narahari Sastry1.   

Abstract

This computational study examines the key factors that control the structures and energetics of the coexistence of multiple noncovalent interactions. 4-Amino-2-iodophenol is taken as a model that exhibits nine different kinds of noncovalent interactions, viz., cation-π (CP), hydrogen bond (HB) through O (OHB), HB through N (NHB), halogen bond (XB), π-π (PP), metal ion-lone pair (ML) through O (OML), ML through N (NML), charge assisted hydrogen bond (CHB) through O (OCHB), and CHB through N (NCHB). Through all possible combinations of these noncovalent interactions, based on energy, geometry, charge, and atoms in molecules (AIM) analysis, we have systematically analyzed the cooperativity among 40 ternary systems and 105 quaternary systems. We have observed that CP-HB, CP-XB, CP-PP, HB-HB, HB-XB, HB-PP, HB-ML, HB-CHB, XB-PP, XB-ML, XB-CHB, PP-ML, and PP-OCHB can form cooperative ternary systems. While studying the quaternary systems, we have observed that HB, XB, and PP work together by enhancing each other's strength. The study highlights that the positively charged species enhances HB-HB and HB-PP interactions and forms cooperative HB-HB-CHB, HB-HB-ML, HB-PP-ML, and HB-PP-CHB systems. Surprisingly, OHB-OML-NML, OHB-OML-OCHB, OHB-OML-NCHB, OHB-NML-OCHB, NHB-OML-NML, NHB-OML-NCHB, and NHB-NML-OCHB are also cooperative in nature despite the electrostatic repulsion between two positive charge species. The current study shows the widespread presence of cooperativity as well as anticooperativity in supramolecular assembles.

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Year:  2015        PMID: 25938813     DOI: 10.1021/acs.jpcb.5b03005

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  4 in total

1.  Cooperativity of intermolecular hydrogen bonds in microsolvated DMSO and DMF clusters: a DFT, AIM, and NCI analysis.

Authors:  Natarajan Sathiyamoorthy Venkataramanan
Journal:  J Mol Model       Date:  2016-06-08       Impact factor: 1.810

2.  Co-operativity in non-covalent interactions in ternary complexes: a comprehensive electronic structure theory based investigation.

Authors:  Shyam Vinod Kumar Panneer; Mahesh Kumar Ravva; Brijesh Kumar Mishra; Venkatesan Subramanian; Narayanasami Sathyamurthy
Journal:  J Mol Model       Date:  2018-08-29       Impact factor: 1.810

3.  Deciphering the Dynamics of Non-Covalent Interactions Affecting Thermal Stability of a Protein: Molecular Dynamics Study on Point Mutant of Thermus thermophilus Isopropylmalate Dehydrogenase.

Authors:  Reetu Sharma; G Narahari Sastry
Journal:  PLoS One       Date:  2015-12-11       Impact factor: 3.240

4.  Complementary, Cooperative Ditopic Halogen Bonding and Electron Donor-Acceptor π-π Complexation in the Formation of Cocrystals.

Authors:  Erin D Speetzen; Chideraa I Nwachukwu; Nathan P Bowling; Eric Bosch
Journal:  Molecules       Date:  2022-02-24       Impact factor: 4.411

  4 in total

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