Literature DB >> 25934373

An evaluation of the performance of five extraction methods: Chelex® 100, QIAamp® DNA Blood Mini Kit, QIAamp® DNA Investigator Kit, QIAsymphony® DNA Investigator® Kit and DNA IQ™.

Stephen C Y Ip1, Sze-Wah Lin2, Kam-Ming Lai3.   

Abstract

DNA left at a crime scene was often limited in amount and far from pristine. To maximize the chance of recovering as much information as possible from such compromised samples, an appropriate extraction method using the available technologies needs to be devised. In this study, we used human blood, buffy coat and a total of 76 simulated touch DNA samples to test the effectiveness of the following five common DNA extraction methods, namely, Chelex® 100, QIAamp® DNA Blood Mini Kit, QIAamp® DNA Investigator Kit, QIAsymphony® DNA Investigator® Kit and DNA IQ™ system, in the recovery of such DNA. We demonstrated that the QIAamp® and QIAsymphony® DNA Investigator® Kits, and the DNA IQ™ system, exhibited a better effectiveness in DNA recovery amongst these methods and yielded extracts with higher success rate in subsequent DNA profiling. These extracts also generated profiles with better intra-colour signal balance. The findings in this work allowed us to propose an extraction approach as follows: 1) casework samples shall be extracted with the QIAamp®/QIAsymphony® DNA Investigator® Kits or the DNA IQ™ system, viz., QIAsymphony® DNA Investigator® Kit and DNA IQ™, due to their higher throughput, are for the touched DNA evidence from the volume crime, while QIAamp® DNA Investigator Kit is preferable for challenging bloodstain samples; and 2) control samples, such as buccal swab, with known identity can be extracted with the Chelex, due to their cheaper cost per sample.
Copyright © 2015 Forensic Science Society. Published by Elsevier Ireland Ltd. All rights reserved.

Entities:  

Keywords:  Blood Mini; Chelex; DNA IQ; DNA extraction; Investigator; Microcon

Mesh:

Substances:

Year:  2015        PMID: 25934373     DOI: 10.1016/j.scijus.2015.01.005

Source DB:  PubMed          Journal:  Sci Justice        ISSN: 1355-0306            Impact factor:   2.124


  11 in total

1.  Towards developing forensically relevant single-cell pipelines by incorporating direct-to-PCR extraction: compatibility, signal quality, and allele detection.

Authors:  Nidhi Sheth; Harish Swaminathan; Amanda J Gonzalez; Ken R Duffy; Catherine M Grgicak
Journal:  Int J Legal Med       Date:  2021-01-23       Impact factor: 2.686

2.  Compatibility of DNA IQ™, QIAamp® DNA Investigator, and QIAsymphony® DNA Investigator® with various fingerprint treatments.

Authors:  Sze-Wah Lin; Stephen C Y Ip; Tze-Tsun Lam; Tung-Fai Tan; Wai-Lung Yeung; Wai-Ming Tam
Journal:  Int J Legal Med       Date:  2016-09-22       Impact factor: 2.686

3.  Age- and gender-independent association of glutathione S-transferase null polymorphisms with chronic myeloid leukemia.

Authors:  Abdel Rahim Mahmoud Muddathir; Elharam Ibrahim Abdallah; Omar Falah Khabour; Ream Elzain Abdelgader; Mahmoud Mohamed Elgari
Journal:  Bosn J Basic Med Sci       Date:  2019-04-15       Impact factor: 3.363

4.  Assessment of Psyllid Handling and DNA Extraction Methods in the Detection of 'Candidatus Liberibacter Solanacearum' by qPCR.

Authors:  María Quintana; Leandro de-León; Jaime Cubero; Felipe Siverio
Journal:  Microorganisms       Date:  2022-05-26

5.  Multiplex STR amplification sensitivity in a silicon microchip.

Authors:  Senne Cornelis; Maarten Fauvart; Yannick Gansemans; Ann-Sophie Vander Plaetsen; Frederik Colle; Rodrigo S Wiederkehr; Dieter Deforce; Tim Stakenborg; Filip Van Nieuwerburgh
Journal:  Sci Rep       Date:  2018-06-29       Impact factor: 4.379

6.  Comparison of two DNA extraction methods from larvae, pupae, and adults of Aedes aegypti.

Authors:  Josué M de la Cruz-Ramos; Luis M Hernández-Triana; Cristina García-De la Peña; Vicente H González-Álvarez; James Weger-Lucarelli; Quetzaly Karmy Siller-Rodríguez; Francisco J Sánchez Rámos; Américo D Rodríguez; Aldo I Ortega-Morales
Journal:  Heliyon       Date:  2019-10-16

7.  Rapid DNA analysis for automated processing and interpretation of low DNA content samples.

Authors:  Rosemary S Turingan; Sameer Vasantgadkar; Luke Palombo; Catherine Hogan; Hua Jiang; Eugene Tan; Richard F Selden
Journal:  Investig Genet       Date:  2016-03-17

8.  Centrifugation-free extraction of circulating nucleic acids using immiscible liquid under vacuum pressure.

Authors:  Hoyoon Lee; Wonhwi Na; Chanhee Park; Kyong Hwa Park; Sehyun Shin
Journal:  Sci Rep       Date:  2018-04-03       Impact factor: 4.379

9.  Sequence investigation of 34 forensic autosomal STRs with massively parallel sequencing.

Authors:  Suhua Zhang; Yong Niu; Yingnan Bian; Rixia Dong; Xiling Liu; Yun Bao; Chao Jin; Hancheng Zheng; Chengtao Li
Journal:  Sci Rep       Date:  2018-05-01       Impact factor: 4.379

10.  Massively parallel sequencing of 231 autosomal SNPs with a custom panel: a SNP typing assay developed for human identification with Ion Torrent PGM.

Authors:  Suhua Zhang; Yingnan Bian; Anqi Chen; Hancheng Zheng; Yuzhen Gao; Yiping Hou; Chengtao Li
Journal:  Forensic Sci Res       Date:  2017-02-14
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.