Literature DB >> 25933345

Reducing degeneracy in maximum entropy models of networks.

Szabolcs Horvát1, Éva Czabarka2, Zoltán Toroczkai1,3.   

Abstract

Based on Jaynes's maximum entropy principle, exponential random graphs provide a family of principled models that allow the prediction of network properties as constrained by empirical data (observables). However, their use is often hindered by the degeneracy problem characterized by spontaneous symmetry breaking, where predictions fail. Here we show that degeneracy appears when the corresponding density of states function is not log-concave, which is typically the consequence of nonlinear relationships between the constraining observables. Exploiting these nonlinear relationships here we propose a solution to the degeneracy problem for a large class of systems via transformations that render the density of states function log-concave. The effectiveness of the method is demonstrated on examples.

Year:  2015        PMID: 25933345     DOI: 10.1103/PhysRevLett.114.158701

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  3 in total

1.  Quantifying randomness in real networks.

Authors:  Chiara Orsini; Marija M Dankulov; Pol Colomer-de-Simón; Almerima Jamakovic; Priya Mahadevan; Amin Vahdat; Kevin E Bassler; Zoltán Toroczkai; Marián Boguñá; Guido Caldarelli; Santo Fortunato; Dmitri Krioukov
Journal:  Nat Commun       Date:  2015-10-20       Impact factor: 14.919

2.  Distinguishing cell phenotype using cell epigenotype.

Authors:  Thomas P Wytock; Adilson E Motter
Journal:  Sci Adv       Date:  2020-03-18       Impact factor: 14.957

3.  A multiscale cerebral neurochemical connectome of the rat brain.

Authors:  Hamid R Noori; Judith Schöttler; Maria Ercsey-Ravasz; Alejandro Cosa-Linan; Melinda Varga; Zoltan Toroczkai; Rainer Spanagel
Journal:  PLoS Biol       Date:  2017-07-03       Impact factor: 8.029

  3 in total

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