Literature DB >> 25927668

Macromolecular crowding gives rise to microviscosity, anomalous diffusion and accelerated actin polymerization.

Rafi Rashid1, Stella Min Ling Chee, Michael Raghunath, Thorsten Wohland.   

Abstract

Macromolecular crowding (MMC) has been used in various in vitro experimental systems to mimic in vivo physiology. This is because the crowded cytoplasm of cells contains many different types of solutes dissolved in an aqueous medium. MMC in the extracellular microenvironment is involved in maintaining stem cells in their undifferentiated state (niche) as well as in aiding their differentiation after they have travelled to new locations outside the niche. MMC at physiologically relevant fractional volume occupancies (FVOs) significantly enhances the adipogenic differentiation of human bone marrow-derived mesenchymal stem cells during chemically induced adipogenesis. The mechanism by which MMC produces this enhancement is not entirely known. In the context of extracellular collagen deposition, we have recently reported the importance of optimizing the FVO while minimizing the bulk viscosity. Two opposing properties will determine the net rate of a biochemical reaction: the negative effect of bulk viscosity and the positive effect of the excluded volume, the latter being expressed by the FVO. In this study we have looked more closely at the effect of viscosity on reaction rates. We have used fluorimetry to measure the rate of actin polymerization and fluorescence correlation spectroscopy (FCS) to measure diffusion of various probes in solutions containing the crowder Ficoll at physiological concentrations. Similar to its effect on collagen, Ficoll enhanced the actin polymerization rate despite increasing the bulk viscosity. Our FCS measurements reveal a relatively minor component of anomalous diffusion. In addition, our measurements do suggest that microviscosity becomes relevant in a crowded environment. We ruled out bulk viscosity as a cause of the rate enhancement by performing the actin polymerization assay in glycerol. These opposite effects of Ficoll and glycerol led us to conclude that microviscosity becomes relevant at the length scale of the reacting molecules within a crowded microenvironment. The excluded volume effect (arising from crowding) increases the effective concentration of actin, which increases the reaction rate, while the microviscosity does not increase sufficiently to lower the reaction rate. This study reveals finer details about the mechanism of MMC.

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Year:  2015        PMID: 25927668     DOI: 10.1088/1478-3975/12/3/034001

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  12 in total

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Authors:  Sylas J Anderson; Christelle Matsuda; Jonathan Garamella; Karthik Reddy Peddireddy; Rae M Robertson-Anderson; Ryan McGorty
Journal:  Biomacromolecules       Date:  2019-11-15       Impact factor: 6.988

3.  Preferential Interactions of a Crowder Protein with the Specific Binding Site of a Native Protein Complex.

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Journal:  J Phys Chem Lett       Date:  2022-01-19       Impact factor: 6.475

4.  Reorganization of Lipid Diffusion by Myelin Basic Protein as Revealed by STED Nanoscopy.

Authors:  Olena Steshenko; Débora M Andrade; Alf Honigmann; Veronika Mueller; Falk Schneider; Erdinc Sezgin; Stefan W Hell; Mikael Simons; Christian Eggeling
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5.  Mixed Macromolecular Crowding: A Protein and Solvent Perspective.

Authors:  Saikat Biswas; Jayanta Kundu; Sanjib K Mukherjee; Pramit Kumar Chowdhury
Journal:  ACS Omega       Date:  2018-04-19

6.  Graphene Enhances Actin Filament Assembly Kinetics and Modulates NIH-3T3 Fibroblast Cell Spreading.

Authors:  Jinho Park; Pavlo Kravchuk; Adithi Krishnaprasad; Tania Roy; Ellen Hyeran Kang
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7.  Making microenvironments: A look into incorporating macromolecular crowding into in vitro experiments, to generate biomimetic microenvironments which are capable of directing cell function for tissue engineering applications.

Authors:  Paula Benny; Michael Raghunath
Journal:  J Tissue Eng       Date:  2017-10-06       Impact factor: 7.813

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9.  The effect of macromolecular crowding on single-round transcription by Escherichia coli RNA polymerase.

Authors:  SangYoon Chung; Eitan Lerner; Yan Jin; Soohong Kim; Yazan Alhadid; Logan Wilson Grimaud; Irina X Zhang; Charles M Knobler; William M Gelbart; Shimon Weiss
Journal:  Nucleic Acids Res       Date:  2019-02-20       Impact factor: 16.971

10.  Crowding tunes the organization and mechanics of actin bundles formed by crosslinking proteins.

Authors:  Jinho Park; Myeongsang Lee; Briana Lee; Nicholas Castaneda; Laurene Tetard; Ellen Hyeran Kang
Journal:  FEBS Lett       Date:  2020-10-21       Impact factor: 4.124

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