Literature DB >> 25924949

A multi-scale approach to designing therapeutics for tuberculosis.

Jennifer J Linderman1, Nicholas A Cilfone, Elsje Pienaar, Chang Gong, Denise E Kirschner.   

Abstract

Approximately one third of the world's population is infected with Mycobacterium tuberculosis. Limited information about how the immune system fights M. tuberculosis and what constitutes protection from the bacteria impact our ability to develop effective therapies for tuberculosis. We present an in vivo systems biology approach that integrates data from multiple model systems and over multiple length and time scales into a comprehensive multi-scale and multi-compartment view of the in vivo immune response to M. tuberculosis. We describe computational models that can be used to study (a) immunomodulation with the cytokines tumor necrosis factor and interleukin 10, (b) oral and inhaled antibiotics, and (c) the effect of vaccination.

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Year:  2015        PMID: 25924949      PMCID: PMC4436084          DOI: 10.1039/c4ib00295d

Source DB:  PubMed          Journal:  Integr Biol (Camb)        ISSN: 1757-9694            Impact factor:   2.192


  126 in total

Review 1.  A metabolic network approach for the identification and prioritization of antimicrobial drug targets.

Authors:  Arvind K Chavali; Kevin M D'Auria; Erik L Hewlett; Richard D Pearson; Jason A Papin
Journal:  Trends Microbiol       Date:  2012-01-31       Impact factor: 17.079

2.  Differential risk of tuberculosis reactivation among anti-TNF therapies is due to drug binding kinetics and permeability.

Authors:  Mohammad Fallahi-Sichani; JoAnne L Flynn; Jennifer J Linderman; Denise E Kirschner
Journal:  J Immunol       Date:  2012-02-29       Impact factor: 5.422

3.  Identification of key processes that control tumor necrosis factor availability in a tuberculosis granuloma.

Authors:  Mohammad Fallahi-Sichani; Matthew A Schaller; Denise E Kirschner; Steven L Kunkel; Jennifer J Linderman
Journal:  PLoS Comput Biol       Date:  2010-05-06       Impact factor: 4.475

4.  Isoniazid pharmacokinetics-pharmacodynamics in an aerosol infection model of tuberculosis.

Authors:  Ramesh Jayaram; Radha K Shandil; Sheshagiri Gaonkar; Parvinder Kaur; B L Suresh; B N Mahesh; R Jayashree; Vrinda Nandi; Sowmya Bharath; E Kantharaj; V Balasubramanian
Journal:  Antimicrob Agents Chemother       Date:  2004-08       Impact factor: 5.191

Review 5.  Advances in immunotherapy for tuberculosis treatment.

Authors:  Gavin J Churchyard; Gilla Kaplan; Dorothy Fallows; Robert S Wallis; Philip Onyebujoh; Graham A Rook
Journal:  Clin Chest Med       Date:  2009-12       Impact factor: 2.878

Review 6.  Lessons from experimental Mycobacterium tuberculosis infections.

Authors:  JoAnne L Flynn
Journal:  Microbes Infect       Date:  2006-01-18       Impact factor: 2.700

7.  Pharmacokinetics-pharmacodynamics of rifampin in an aerosol infection model of tuberculosis.

Authors:  Ramesh Jayaram; Sheshagiri Gaonkar; Parvinder Kaur; B L Suresh; B N Mahesh; R Jayashree; Vrinda Nandi; Sowmya Bharat; R K Shandil; E Kantharaj; V Balasubramanian
Journal:  Antimicrob Agents Chemother       Date:  2003-07       Impact factor: 5.191

Review 8.  New old challenges in tuberculosis: potentially effective nanotechnologies in drug delivery.

Authors:  Alejandro Sosnik; Angel M Carcaboso; Romina J Glisoni; Marcela A Moretton; Diego A Chiappetta
Journal:  Adv Drug Deliv Rev       Date:  2009-11-13       Impact factor: 15.470

9.  Metabolic network analysis predicts efficacy of FDA-approved drugs targeting the causative agent of a neglected tropical disease.

Authors:  Arvind K Chavali; Anna S Blazier; Jose L Tlaxca; Paul A Jensen; Richard D Pearson; Jason A Papin
Journal:  BMC Syst Biol       Date:  2012-04-27

10.  Macrophage deactivation by interleukin 10.

Authors:  C Bogdan; Y Vodovotz; C Nathan
Journal:  J Exp Med       Date:  1991-12-01       Impact factor: 14.307

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  14 in total

1.  A review of computational and mathematical modeling contributions to our understanding of Mycobacterium tuberculosis within-host infection and treatment.

Authors:  Denise Kirschner; Elsje Pienaar; Simeone Marino; Jennifer J Linderman
Journal:  Curr Opin Syst Biol       Date:  2017-05-22

Review 2.  In Vitro Granuloma Models of Tuberculosis: Potential and Challenges.

Authors:  Paul Elkington; Maria Lerm; Nidhi Kapoor; Robert Mahon; Elsje Pienaar; Dongeun Huh; Deepak Kaushal; Larry S Schlesinger
Journal:  J Infect Dis       Date:  2019-05-24       Impact factor: 5.226

Review 3.  Genetic variants in Alzheimer disease - molecular and brain network approaches.

Authors:  Chris Gaiteri; Sara Mostafavi; Christopher J Honey; Philip L De Jager; David A Bennett
Journal:  Nat Rev Neurol       Date:  2016-06-10       Impact factor: 42.937

Review 4.  Review of the systems biology of the immune system using agent-based models.

Authors:  Snehal B Shinde; Manish P Kurhekar
Journal:  IET Syst Biol       Date:  2018-06       Impact factor: 1.615

5.  Modeling Granulomas in Response to Infection in the Lung.

Authors:  Wenrui Hao; Larry S Schlesinger; Avner Friedman
Journal:  PLoS One       Date:  2016-03-17       Impact factor: 3.240

6.  Local Inflammation, Dissemination and Coalescence of Lesions Are Key for the Progression toward Active Tuberculosis: The Bubble Model.

Authors:  Clara Prats; Cristina Vilaplana; Joaquim Valls; Elena Marzo; Pere-Joan Cardona; Daniel López
Journal:  Front Microbiol       Date:  2016-02-02       Impact factor: 5.640

7.  Applying optimization algorithms to tuberculosis antibiotic treatment regimens.

Authors:  Joseph M Cicchese; Elsje Pienaar; Denise E Kirschner; Jennifer J Linderman
Journal:  Cell Mol Bioeng       Date:  2017-08-30       Impact factor: 2.321

8.  Strategic Priming with Multiple Antigens can Yield Memory Cell Phenotypes Optimized for Infection with Mycobacterium tuberculosis: A Computational Study.

Authors:  Cordelia Ziraldo; Chang Gong; Denise E Kirschner; Jennifer J Linderman
Journal:  Front Microbiol       Date:  2016-01-06       Impact factor: 5.640

9.  Predictive Model of Lymphocyte-Specific Protein Tyrosine Kinase (LCK) Autoregulation.

Authors:  Jennifer A Rohrs; Pin Wang; Stacey D Finley
Journal:  Cell Mol Bioeng       Date:  2016-04-26       Impact factor: 2.321

Review 10.  Mathematical Models for Immunology: Current State of the Art and Future Research Directions.

Authors:  Raluca Eftimie; Joseph J Gillard; Doreen A Cantrell
Journal:  Bull Math Biol       Date:  2016-10-06       Impact factor: 1.758

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