Literature DB >> 25924071

MiXCR: software for comprehensive adaptive immunity profiling.

Dmitriy A Bolotin1, Stanislav Poslavsky2, Igor Mitrophanov2, Mikhail Shugay3, Ilgar Z Mamedov2, Ekaterina V Putintseva2, Dmitriy M Chudakov3.   

Abstract

Mesh：

Substances：

Year:  2015        PMID： 25924071     DOI： 10.1038/nmeth.3364

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


× No keyword cloud information.
  7 in total

1.  MiTCR: software for T-cell receptor sequencing data analysis.

Authors:  Dmitriy A Bolotin; Mikhail Shugay; Ilgar Z Mamedov; Ekaterina V Putintseva; Maria A Turchaninova; Ivan V Zvyagin; Olga V Britanova; Dmitriy M Chudakov
Journal:  Nat Methods       Date:  2013-07-28       Impact factor: 28.547

2.  Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine.

Authors:  Niclas Thomas; James Heather; Wilfred Ndifon; John Shawe-Taylor; Benjamin Chain
Journal:  Bioinformatics       Date:  2013-01-09       Impact factor: 6.937

3.  Next generation sequencing for TCR repertoire profiling: platform-specific features and correction algorithms.

Authors:  Dmitry A Bolotin; Ilgar Z Mamedov; Olga V Britanova; Ivan V Zvyagin; Dmitriy Shagin; Svetlana V Ustyugova; Maria A Turchaninova; Sergey Lukyanov; Yury B Lebedev; Dmitriy M Chudakov
Journal:  Eur J Immunol       Date:  2012-09-24       Impact factor: 5.532

Review 4.  Unifying immunology with informatics and multiscale biology.

Authors:  Brian A Kidd; Lauren A Peters; Eric E Schadt; Joel T Dudley
Journal:  Nat Immunol       Date:  2014-02       Impact factor: 25.606

5.  IMGT/HighV QUEST paradigm for T cell receptor IMGT clonotype diversity and next generation repertoire immunoprofiling.

Authors:  Shuo Li; Marie-Paule Lefranc; John J Miles; Eltaf Alamyar; Véronique Giudicelli; Patrice Duroux; J Douglas Freeman; Vincent D A Corbin; Jean-Pierre Scheerlinck; Michael A Frohman; Paul U Cameron; Magdalena Plebanski; Bruce Loveland; Scott R Burrows; Anthony T Papenfuss; Eric J Gowans
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

6.  IgBLAST: an immunoglobulin variable domain sequence analysis tool.

Authors:  Jian Ye; Ning Ma; Thomas L Madden; James M Ostell
Journal:  Nucleic Acids Res       Date:  2013-05-13       Impact factor: 16.971

7.  GenBank.

Authors:  Dennis A Benson; Mark Cavanaugh; Karen Clark; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; Eric W Sayers
Journal:  Nucleic Acids Res       Date:  2012-11-27       Impact factor: 16.971
  7 in total
  481 in total

1.  Recovery and assessment of leukocytes from LR Express filters.

Authors:  Abby K Wegehaupt; Ellen K Roufs; Cory R Hewitt; Marisela L Killian; Oxana Gorbatenko; Cynthia M Anderson; M Scott Killian
Journal:  Biologicals       Date:  2017-07-31       Impact factor: 1.856

2.  Clonotypic heterogeneity in cutaneous T-cell lymphoma (mycosis fungoides) revealed by comprehensive whole-exome sequencing.

Authors:  Aishwarya Iyer; Dylan Hennessey; Sandra O'Keefe; Jordan Patterson; Weiwei Wang; Thomas Salopek; Gane Ka-Shu Wong; Robert Gniadecki
Journal:  Blood Adv       Date:  2019-04-09

3.  Filtering Next-Generation Sequencing of the Ig Gene Repertoire Data Using Antibody Structural Information.

Authors:  Aleksandr Kovaltsuk; Konrad Krawczyk; Sebastian Kelm; James Snowden; Charlotte M Deane
Journal:  J Immunol       Date:  2018-11-05       Impact factor: 5.422

4.  IL-1β Induces the Rapid Secretion of the Antimicrobial Protein IL-26 from Th17 Cells.

Authors:  David I Weiss; Feiyang Ma; Alexander A Merleev; Emanual Maverakis; Michel Gilliet; Samuel J Balin; Bryan D Bryson; Maria Teresa Ochoa; Matteo Pellegrini; Barry R Bloom; Robert L Modlin
Journal:  J Immunol       Date:  2019-06-24       Impact factor: 5.422

Review 5.  Comparative analysis of murine T-cell receptor repertoires.

Authors:  Mark Izraelson; Tatiana O Nakonechnaya; Bruno Moltedo; Evgeniy S Egorov; Sofya A Kasatskaya; Ekaterina V Putintseva; Ilgar Z Mamedov; Dmitriy B Staroverov; Irina I Shemiakina; Maria Y Zakharova; Alexey N Davydov; Dmitriy A Bolotin; Mikhail Shugay; Dmitriy M Chudakov; Alexander Y Rudensky; Olga V Britanova
Journal:  Immunology       Date:  2017-11-27       Impact factor: 7.397

6.  Antibodies Encoded by FCRL4-Bearing Memory B Cells Preferentially Recognize Commensal Microbial Antigens.

Authors:  Yanling Liu; Jonathan R McDaniel; Srijit Khan; Paolo Campisi; Evan J Propst; Theresa Holler; Eyal Grunebaum; George Georgiou; Gregory C Ippolito; Götz R A Ehrhardt
Journal:  J Immunol       Date:  2018-04-27       Impact factor: 5.422

7.  CapTCR-seq: hybrid capture for T-cell receptor repertoire profiling.

Authors:  David T Mulder; Etienne R Mahé; Mark Dowar; Youstina Hanna; Tiantian Li; Linh T Nguyen; Marcus O Butler; Naoto Hirano; Jan Delabie; Pamela S Ohashi; Trevor J Pugh
Journal:  Blood Adv       Date:  2018-12-11

8.  Dynamic changes of T cell receptor repertoires in patients with hepatitis B virus-related acute-on-chronic liver failure.

Authors:  Guojun Shen; Shuilin Sun; Jie Huang; Haohui Deng; Ying Xu; Zhanhui Wang; Xiong Tang; Xiaodong Gong
Journal:  Hepatol Int       Date:  2019-12-23       Impact factor: 6.047

9.  Optimization of therapeutic antibodies by predicting antigen specificity from antibody sequence via deep learning.

Authors:  Derek M Mason; Simon Friedensohn; Cédric R Weber; Christian Jordi; Bastian Wagner; Simon M Meng; Roy A Ehling; Lucia Bonati; Jan Dahinden; Pablo Gainza; Bruno E Correia; Sai T Reddy
Journal:  Nat Biomed Eng       Date:  2021-04-15       Impact factor: 25.671

10.  Gut microbiota-specific IgA+ B cells traffic to the CNS in active multiple sclerosis.

Authors:  Anne-Katrin Pröbstel; Xiaoyuan Zhou; Ryan Baumann; Sven Wischnewski; Michael Kutza; Olga L Rojas; Katrin Sellrie; Antje Bischof; Kicheol Kim; Akshaya Ramesh; Ravi Dandekar; Ariele L Greenfield; Ryan D Schubert; Jordan E Bisanz; Stephanie Vistnes; Khashayar Khaleghi; James Landefeld; Gina Kirkish; Friederike Liesche-Starnecker; Valeria Ramaglia; Sneha Singh; Edwina B Tran; Patrick Barba; Kelsey Zorn; Johanna Oechtering; Karin Forsberg; Lawrence R Shiow; Roland G Henry; Jennifer Graves; Bruce A C Cree; Stephen L Hauser; Jens Kuhle; Jeffrey M Gelfand; Peter M Andersen; Jürgen Schlegel; Peter J Turnbaugh; Peter H Seeberger; Jennifer L Gommerman; Michael R Wilson; Lucas Schirmer; Sergio E Baranzini
Journal:  Sci Immunol       Date:  2020-11-20
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.