Literature DB >> 25922515

The Fossil Calibration Database-A New Resource for Divergence Dating.

Daniel T Ksepka1, James F Parham2, James F Allman3, Michael J Benton4, Matthew T Carrano5, Karen A Cranston6, Philip C J Donoghue4, Jason J Head7, Elizabeth J Hermsen8, Randall B Irmis9, Walter G Joyce10, Manpreet Kohli11, Kristin D Lamm12, Dan Leehr13, Josés L Patané14, P David Polly15, Matthew J Phillips16, N Adam Smith17, Nathan D Smith18, Marcel Van Tuinen19, Jessica L Ware11, Rachel C M Warnock5.   

Abstract

Fossils provide the principal basis for temporal calibrations, which are critical to the accuracy of divergence dating analyses. Translating fossil data into minimum and maximum bounds for calibrations is the most important-often least appreciated-step of divergence dating. Properly justified calibrations require the synthesis of phylogenetic, paleontological, and geological evidence and can be difficult for nonspecialists to formulate. The dynamic nature of the fossil record (e.g., new discoveries, taxonomic revisions, updates of global or local stratigraphy) requires that calibration data be updated continually lest they become obsolete. Here, we announce the Fossil Calibration Database (http://fossilcalibrations.org), a new open-access resource providing vetted fossil calibrations to the scientific community. Calibrations accessioned into this database are based on individual fossil specimens and follow best practices for phylogenetic justification and geochronological constraint. The associated Fossil Calibration Series, a calibration-themed publication series at Palaeontologia Electronica, will serve as a key pipeline for peer-reviewed calibrations to enter the database.
© The Author(s) 2015. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Keywords:  Calibration; divergence dating; fossil

Mesh:

Year:  2015        PMID: 25922515     DOI: 10.1093/sysbio/syv025

Source DB:  PubMed          Journal:  Syst Biol        ISSN: 1063-5157            Impact factor:   15.683


  12 in total

1.  Disconnecting bones within the jaw-otic network modules underlies mammalian middle ear evolution.

Authors:  Aitor Navarro-Díaz; Borja Esteve-Altava; Diego Rasskin-Gutman
Journal:  J Anat       Date:  2019-04-12       Impact factor: 2.610

Review 2.  Bayesian molecular clock dating of species divergences in the genomics era.

Authors:  Mario dos Reis; Philip C J Donoghue; Ziheng Yang
Journal:  Nat Rev Genet       Date:  2015-12-21       Impact factor: 53.242

3.  The Making of Calibration Sausage Exemplified by Recalibrating the Transcriptomic Timetree of Jawed Vertebrates.

Authors:  David Marjanović
Journal:  Front Genet       Date:  2021-05-12       Impact factor: 4.599

4.  Ignoring stratigraphic age uncertainty leads to erroneous estimates of species divergence times under the fossilized birth-death process.

Authors:  Joëlle Barido-Sottani; Gabriel Aguirre-Fernández; Melanie J Hopkins; Tanja Stadler; Rachel Warnock
Journal:  Proc Biol Sci       Date:  2019-05-15       Impact factor: 5.349

5.  BioHackathon 2015: Semantics of data for life sciences and reproducible research.

Authors:  Rutger A Vos; Toshiaki Katayama; Hiroyuki Mishima; Shin Kawano; Shuichi Kawashima; Jin-Dong Kim; Yuki Moriya; Toshiaki Tokimatsu; Atsuko Yamaguchi; Yasunori Yamamoto; Hongyan Wu; Peter Amstutz; Erick Antezana; Nobuyuki P Aoki; Kazuharu Arakawa; Jerven T Bolleman; Evan Bolton; Raoul J P Bonnal; Hidemasa Bono; Kees Burger; Hirokazu Chiba; Kevin B Cohen; Eric W Deutsch; Jesualdo T Fernández-Breis; Gang Fu; Takatomo Fujisawa; Atsushi Fukushima; Alexander García; Naohisa Goto; Tudor Groza; Colin Hercus; Robert Hoehndorf; Kotone Itaya; Nick Juty; Takeshi Kawashima; Jee-Hyub Kim; Akira R Kinjo; Masaaki Kotera; Kouji Kozaki; Sadahiro Kumagai; Tatsuya Kushida; Thomas Lütteke; Masaaki Matsubara; Joe Miyamoto; Attayeb Mohsen; Hiroshi Mori; Yuki Naito; Takeru Nakazato; Jeremy Nguyen-Xuan; Kozo Nishida; Naoki Nishida; Hiroyo Nishide; Soichi Ogishima; Tazro Ohta; Shujiro Okuda; Benedict Paten; Jean-Luc Perret; Philip Prathipati; Pjotr Prins; Núria Queralt-Rosinach; Daisuke Shinmachi; Shinya Suzuki; Tsuyosi Tabata; Terue Takatsuki; Kieron Taylor; Mark Thompson; Ikuo Uchiyama; Bruno Vieira; Chih-Hsuan Wei; Mark Wilkinson; Issaku Yamada; Ryota Yamanaka; Kazutoshi Yoshitake; Akiyasu C Yoshizawa; Michel Dumontier; Kenjiro Kosaki; Toshihisa Takagi
Journal:  F1000Res       Date:  2020-02-24

6.  Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa.

Authors:  Alexandre Antonelli; Hannes Hettling; Fabien L Condamine; Karin Vos; R Henrik Nilsson; Michael J Sanderson; Hervé Sauquet; Ruud Scharn; Daniele Silvestro; Mats Töpel; Christine D Bacon; Bengt Oxelman; Rutger A Vos
Journal:  Syst Biol       Date:  2017-03-01       Impact factor: 15.683

7.  So many genes, so little time: A practical approach to divergence-time estimation in the genomic era.

Authors:  Stephen A Smith; Joseph W Brown; Joseph F Walker
Journal:  PLoS One       Date:  2018-05-17       Impact factor: 3.240

8.  Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola.

Authors:  Kirill Grigorev; Sergey Kliver; Pavel Dobrynin; Aleksey Komissarov; Walter Wolfsberger; Ksenia Krasheninnikova; Yashira M Afanador-Hernández; Adam L Brandt; Liz A Paulino; Rosanna Carreras; Luis E Rodríguez; Adrell Núñez; Jessica R Brandt; Filipe Silva; J David Hernández-Martich; Audrey J Majeske; Agostinho Antunes; Alfred L Roca; Stephen J O'Brien; Juan Carlos Martínez-Cruzado; Taras K Oleksyk
Journal:  Gigascience       Date:  2018-06-01       Impact factor: 6.524

9.  Rates and Rocks: Strengths and Weaknesses of Molecular Dating Methods.

Authors:  Stéphane Guindon
Journal:  Front Genet       Date:  2020-05-27       Impact factor: 4.599

10.  Genome-Wide Identification, Characterization, and Expression Analysis of DDE_Tnp_4 Family Genes in Eriocheir sinensis.

Authors:  Yuanfeng Xu; Jinbin Zheng; Yanan Yang; Zhaoxia Cui
Journal:  Antibiotics (Basel)       Date:  2021-11-23
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.