Literature DB >> 25920534

From DIADEM to BigNeuron.

Hanchuan Peng1, Erik Meijering, Giorgio A Ascoli.   

Abstract

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Year:  2015        PMID： 25920534      PMCID： PMC4470777          DOI： 10.1007/s12021-015-9270-9

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN： 1539-2791


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  7 in total

Review 1.  Neuron tracing in perspective.

Authors:  Erik Meijering
Journal:  Cytometry A       Date:  2010-07       Impact factor: 4.355

2.  A broadly applicable 3-D neuron tracing method based on open-curve snake.

Authors:  Yu Wang; Arunachalam Narayanaswamy; Chia-Ling Tsai; Badrinath Roysam
Journal:  Neuroinformatics       Date:  2011-09

3.  The DIADEM and beyond.

Authors:  Yuan Liu
Journal:  Neuroinformatics       Date:  2011-09

4.  APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree.

Authors:  Hang Xiao; Hanchuan Peng
Journal:  Bioinformatics       Date:  2013-04-19       Impact factor: 6.937

5.  The importance of metadata to assess information content in digital reconstructions of neuronal morphology.

Authors:  Ruchi Parekh; Rubén Armañanzas; Giorgio A Ascoli
Journal:  Cell Tissue Res       Date:  2015-02-05       Impact factor: 5.249

Review 6.  Neuronal morphology goes digital: a research hub for cellular and system neuroscience.

Authors:  Ruchi Parekh; Giorgio A Ascoli
Journal:  Neuron       Date:  2013-03-20       Impact factor: 17.173

7.  Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis.

Authors:  Hanchuan Peng; Jianyong Tang; Hang Xiao; Alessandro Bria; Jianlong Zhou; Victoria Butler; Zhi Zhou; Paloma T Gonzalez-Bellido; Seung W Oh; Jichao Chen; Ananya Mitra; Richard W Tsien; Hongkui Zeng; Giorgio A Ascoli; Giulio Iannello; Michael Hawrylycz; Eugene Myers; Fuhui Long
Journal:  Nat Commun       Date:  2014-07-11       Impact factor: 14.919
  7 in total
  23 in total

1.  TReMAP: Automatic 3D Neuron Reconstruction Based on Tracing, Reverse Mapping and Assembling of 2D Projections.

Authors:  Zhi Zhou; Xiaoxiao Liu; Brian Long; Hanchuan Peng
Journal:  Neuroinformatics       Date:  2016-01

2.  TraceMontage: A method for merging multiple independent neuronal traces.

Authors:  Aslan S Dizaji; Logan A Walker; Dawen Cai
Journal:  J Neurosci Methods       Date:  2019-12-24       Impact factor: 2.390

3.  BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies.

Authors:  Yinan Wan; Fuhui Long; Lei Qu; Hang Xiao; Michael Hawrylycz; Eugene W Myers; Hanchuan Peng
Journal:  Neuroinformatics       Date:  2015-10

4.  SparseTracer: the Reconstruction of Discontinuous Neuronal Morphology in Noisy Images.

Authors:  Shiwei Li; Hang Zhou; Tingwei Quan; Jing Li; Yuxin Li; Anan Li; Qingming Luo; Hui Gong; Shaoqun Zeng
Journal:  Neuroinformatics       Date:  2017-04

5.  FMST: an Automatic Neuron Tracing Method Based on Fast Marching and Minimum Spanning Tree.

Authors:  Jian Yang; Ming Hao; Xiaoyang Liu; Zhijiang Wan; Ning Zhong; Hanchuan Peng
Journal:  Neuroinformatics       Date:  2019-04

Review 6.  Automated Neuron Tracing Methods: An Updated Account.

Authors:  Ludovica Acciai; Paolo Soda; Giulio Iannello
Journal:  Neuroinformatics       Date:  2016-10

7.  Rivulet: 3D Neuron Morphology Tracing with Iterative Back-Tracking.

Authors:  Siqi Liu; Donghao Zhang; Sidong Liu; Dagan Feng; Hanchuan Peng; Weidong Cai
Journal:  Neuroinformatics       Date:  2016-10

8.  GTree: an Open-source Tool for Dense Reconstruction of Brain-wide Neuronal Population.

Authors:  Hang Zhou; Shiwei Li; Anan Li; Qing Huang; Feng Xiong; Ning Li; Jiacheng Han; Hongtao Kang; Yijun Chen; Yun Li; Huimin Lin; Yu-Hui Zhang; Xiaohua Lv; Xiuli Liu; Hui Gong; Qingming Luo; Shaoqun Zeng; Tingwei Quan
Journal:  Neuroinformatics       Date:  2021-04

9.  Soma Detection in 3D Images of Neurons using Machine Learning Technique.

Authors:  Guan-Wei He; Ting-Yuan Wang; Ann-Shyn Chiang; Yu-Tai Ching
Journal:  Neuroinformatics       Date:  2018-01

10.  Automated 3D Soma Segmentation with Morphological Surface Evolution for Neuron Reconstruction.

Authors:  Donghao Zhang; Siqi Liu; Yang Song; Dagan Feng; Hanchuan Peng; Weidong Cai
Journal:  Neuroinformatics       Date:  2018-04
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