Literature DB >> 25918038

Meltdown: A Tool to Help in the Interpretation of Thermal Melt Curves Acquired by Differential Scanning Fluorimetry.

Nicholas Rosa1, Marko Ristic1, Shane A Seabrook1, David Lovell2, Del Lucent3, Janet Newman4.   

Abstract

The output of a differential scanning fluorimetry (DSF) assay is a series of melt curves, which need to be interpreted to get value from the assay. An application that translates raw thermal melt curve data into more easily assimilated knowledge is described. This program, called "Meltdown," conducts four main activities--control checks, curve normalization, outlier rejection, and melt temperature (T(m)) estimation--and performs optimally in the presence of triplicate (or higher) sample data. The final output is a report that summarizes the results of a DSF experiment. The goal of Meltdown is not to replace human analysis of the raw fluorescence data but to provide a meaningful and comprehensive interpretation of the data to make this useful experimental technique accessible to inexperienced users, as well as providing a starting point for detailed analyses by more experienced users.
© 2015 Society for Laboratory Automation and Screening.

Entities:  

Keywords:  Thermofluor; differential scanning fluorimetry; high-throughput formulation screening; thermal shift analysis

Mesh:

Year:  2015        PMID: 25918038     DOI: 10.1177/1087057115584059

Source DB:  PubMed          Journal:  J Biomol Screen        ISSN: 1087-0571


  17 in total

1.  SimpleDSFviewer: A tool to analyze and view differential scanning fluorimetry data for characterizing protein thermal stability and interactions.

Authors:  Changye Sun; Yong Li; Edwin A Yates; David G Fernig
Journal:  Protein Sci       Date:  2019-08-19       Impact factor: 6.725

Review 2.  Characterization of aminoacyl-tRNA synthetase stability and substrate interaction by differential scanning fluorimetry.

Authors:  Jamie A Abbott; Nathan M Livingston; Shawn B Egri; Ethan Guth; Christopher S Francklyn
Journal:  Methods       Date:  2016-10-26       Impact factor: 3.608

3.  An unexpected vestigial protein complex reveals the evolutionary origins of an s-triazine catabolic enzyme.

Authors:  Lygie Esquirol; Thomas S Peat; Matthew Wilding; Jian-Wei Liu; Nigel G French; Carol J Hartley; Hideki Onagi; Thomas Nebl; Christopher J Easton; Janet Newman; Colin Scott
Journal:  J Biol Chem       Date:  2018-03-09       Impact factor: 5.157

4.  Structural Insight into African Swine Fever Virus A179L-Mediated Inhibition of Apoptosis.

Authors:  Suresh Banjara; Sofia Caria; Linda K Dixon; Mark G Hinds; Marc Kvansakul
Journal:  J Virol       Date:  2017-02-28       Impact factor: 5.103

5.  A low-cost 3D-printable differential scanning fluorometer for protein and RNA melting experiments.

Authors:  Fabian Barthels; Stefan J Hammerschmidt; Tim R Fischer; Collin Zimmer; Elisabeth Kallert; Mark Helm; Christian Kersten; Tanja Schirmeister
Journal:  HardwareX       Date:  2022-01-07

6.  Structural characterization of a novel monotreme-specific protein with antimicrobial activity from the milk of the platypus.

Authors:  Janet Newman; Julie A Sharp; Ashwantha Kumar Enjapoori; John Bentley; Kevin R Nicholas; Timothy E Adams; Thomas S Peat
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2018-01-01       Impact factor: 1.056

7.  Structural and Molecular Dynamics of Mycobacterium tuberculosis Malic Enzyme, a Potential Anti-TB Drug Target.

Authors:  Kalistyn H Burley; Bonnie J Cuthbert; Piyali Basu; Jane Newcombe; Ervin M Irimpan; Robert Quechol; Ilona P Foik; David L Mobley; Dany J V Beste; Celia W Goulding
Journal:  ACS Infect Dis       Date:  2020-12-23       Impact factor: 5.084

8.  Structure-guided selection of puromycin N-acetyltransferase mutants with enhanced selection stringency for deriving mammalian cell lines expressing recombinant proteins.

Authors:  Alessandro T Caputo; Oliver M Eder; Hana Bereznakova; Heleen Pothuis; Albert Ardevol; Janet Newman; Stewart Nuttall; Thomas S Peat; Timothy E Adams
Journal:  Sci Rep       Date:  2021-03-04       Impact factor: 4.996

9.  Multivalent Interactions of Human Primary Amine Oxidase with the V and C22 Domains of Sialic Acid-Binding Immunoglobulin-Like Lectin-9 Regulate Its Binding and Amine Oxidase Activity.

Authors:  Heli Elovaara; Vimal Parkash; Ruth Fair-Mäkelä; Outi M H Salo-Ahen; Gabriela Guédez; Eva Bligt-Lindén; Janne Grönholm; Sirpa Jalkanen; Tiina A Salminen
Journal:  PLoS One       Date:  2016-11-28       Impact factor: 3.240

Review 10.  Protein stability: a crystallographer's perspective.

Authors:  Marc C Deller; Leopold Kong; Bernhard Rupp
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-01-26       Impact factor: 1.056

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