Literature DB >> 25916794

A state of the art of metabolic networks of unicellular microalgae and cyanobacteria for biofuel production.

Caroline Baroukh1, Rafael Muñoz-Tamayo2, Jean-Philippe Steyer3, Olivier Bernard4.   

Abstract

The most promising and yet challenging application of microalgae and cyanobacteria is the production of renewable energy: biodiesel from microalgae triacylglycerols and bioethanol from cyanobacteria carbohydrates. A thorough understanding of microalgal and cyanobacterial metabolism is necessary to master and optimize biofuel production yields. To this end, systems biology and metabolic modeling have proven to be very efficient tools if supported by an accurate knowledge of the metabolic network. However, unlike heterotrophic microorganisms that utilize the same substrate for energy and as carbon source, microalgae and cyanobacteria require light for energy and inorganic carbon (CO2 or bicarbonate) as carbon source. This double specificity, together with the complex mechanisms of light capture, makes the representation of metabolic network nonstandard. Here, we review the existing metabolic networks of photoautotrophic microalgae and cyanobacteria. We highlight how these networks have been useful for gaining insight on photoautotrophic metabolism.
Copyright © 2015 International Metabolic Engineering Society. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Carbohydrates; Lipids; Metabolic modeling; Metabolic network; Photoautotrophic metabolism

Mesh:

Substances:

Year:  2015        PMID: 25916794     DOI: 10.1016/j.ymben.2015.03.019

Source DB:  PubMed          Journal:  Metab Eng        ISSN: 1096-7176            Impact factor:   9.783


  12 in total

1.  Predicting Dynamic Metabolic Demands in the Photosynthetic Eukaryote Chlorella vulgaris.

Authors:  Cristal Zuñiga; Jennifer Levering; Maciek R Antoniewicz; Michael T Guarnieri; Michael J Betenbaugh; Karsten Zengler
Journal:  Plant Physiol       Date:  2017-09-26       Impact factor: 8.340

2.  Unique attributes of cyanobacterial metabolism revealed by improved genome-scale metabolic modeling and essential gene analysis.

Authors:  Jared T Broddrick; Benjamin E Rubin; David G Welkie; Niu Du; Nathan Mih; Spencer Diamond; Jenny J Lee; Susan S Golden; Bernhard O Palsson
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-01       Impact factor: 11.205

3.  Genome-Scale Metabolic Model for the Green Alga Chlorella vulgaris UTEX 395 Accurately Predicts Phenotypes under Autotrophic, Heterotrophic, and Mixotrophic Growth Conditions.

Authors:  Cristal Zuñiga; Chien-Ting Li; Tyler Huelsman; Jennifer Levering; Daniel C Zielinski; Brian O McConnell; Christopher P Long; Eric P Knoshaug; Michael T Guarnieri; Maciek R Antoniewicz; Michael J Betenbaugh; Karsten Zengler
Journal:  Plant Physiol       Date:  2016-07-02       Impact factor: 8.340

Review 4.  In Metabolic Engineering of Eukaryotic Microalgae: Potential and Challenges Come with Great Diversity.

Authors:  Javier A Gimpel; Vitalia Henríquez; Stephen P Mayfield
Journal:  Front Microbiol       Date:  2015-12-15       Impact factor: 5.640

5.  CRISPR interference (CRISPRi) for gene regulation and succinate production in cyanobacterium S. elongatus PCC 7942.

Authors:  Chun-Hung Huang; Claire R Shen; Hung Li; Li-Yu Sung; Meng-Ying Wu; Yu-Chen Hu
Journal:  Microb Cell Fact       Date:  2016-11-15       Impact factor: 5.328

6.  Computational metabolic engineering strategies for growth-coupled biofuel production by Synechocystis.

Authors:  Kiyan Shabestary; Elton P Hudson
Journal:  Metab Eng Commun       Date:  2016-07-20

7.  Dynamic metabolic modeling of heterotrophic and mixotrophic microalgal growth on fermentative wastes.

Authors:  Caroline Baroukh; Violette Turon; Olivier Bernard
Journal:  PLoS Comput Biol       Date:  2017-06-05       Impact factor: 4.475

Review 8.  Microalgae and cyanobacteria modeling in water resource recovery facilities: A critical review.

Authors:  Brian D Shoener; Stephanie M Schramm; Fabrice Béline; Olivier Bernard; Carlos Martínez; Benedek G Plósz; Spencer Snowling; Jean-Philippe Steyer; Borja Valverde-Pérez; Dorottya Wágner; Jeremy S Guest
Journal:  Water Res X       Date:  2018-12-28

9.  Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production.

Authors:  Nicolás Loira; Sebastian Mendoza; María Paz Cortés; Natalia Rojas; Dante Travisany; Alex Di Genova; Natalia Gajardo; Nicole Ehrenfeld; Alejandro Maass
Journal:  BMC Syst Biol       Date:  2017-07-04

10.  Optimizing cyanobacterial product synthesis: Meeting the challenges.

Authors:  Tomáš Zavřel; Jan Červený; Henning Knoop; Ralf Steuer
Journal:  Bioengineered       Date:  2016-07-15       Impact factor: 3.269

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