Literature DB >> 25916483

Conversion of Uric Acid into Ammonium in Oil-Degrading Marine Microbial Communities: a Possible Role of Halomonads.

Christoph Gertler1,2, Rafael Bargiela3, Francesca Mapelli4,5, Xifang Han6, Jianwei Chen6, Tran Hai7, Ranya A Amer8, Mouna Mahjoubi9, Hanan Malkawi10, Mirko Magagnini11, Ameur Cherif9, Yasser R Abdel-Fattah8, Nicolas Kalogerakis12, Daniele Daffonchio4,5, Manuel Ferrer3, Peter N Golyshin7.   

Abstract

Uric acid is a promising hydrophobic nitrogen source for biostimulation of microbial activities in oil-impacted marine environments. This study investigated metabolic processes and microbial community changes in a series of microcosms using sediment from the Mediterranean and the Red Sea amended with ammonium and uric acid. Respiration, emulsification, ammonium and protein concentration measurements suggested a rapid production of ammonium from uric acid accompanied by the development of microbial communities containing hydrocarbonoclastic bacteria after 3 weeks of incubation. About 80 % of uric acid was converted to ammonium within the first few days of the experiment. Microbial population dynamics were investigated by Ribosomal Intergenic Spacer Analysis and Illumina sequencing as well as by culture-based techniques. Resulting data indicated that strains related to Halomonas spp. converted uric acid into ammonium, which stimulated growth of microbial consortia dominated by Alcanivorax spp. and Pseudomonas spp. Several strains of Halomonas spp. were isolated on uric acid as the sole carbon source showed location specificity. These results point towards a possible role of halomonads in the conversion of uric acid to ammonium utilized by hydrocarbonoclastic bacteria.

Entities:  

Keywords:  Alcanivorax; Bioremediation; Crude oil degradation

Mesh:

Substances:

Year:  2015        PMID: 25916483     DOI: 10.1007/s00248-015-0606-7

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  39 in total

1.  Microbial populations and hydrocarbon biodegradation potentials in fertilized shoreline sediments affected by the T/V Exxon Valdez oil spill.

Authors:  J E Lindstrom; R C Prince; J C Clark; M J Grossman; T R Yeager; J F Braddock; E J Brown
Journal:  Appl Environ Microbiol       Date:  1991-09       Impact factor: 4.792

2.  SOAP2: an improved ultrafast tool for short read alignment.

Authors:  Ruiqiang Li; Chang Yu; Yingrui Li; Tak-Wah Lam; Siu-Ming Yiu; Karsten Kristiansen; Jun Wang
Journal:  Bioinformatics       Date:  2009-06-03       Impact factor: 6.937

3.  Composition and dynamics of biostimulated indigenous oil-degrading microbial consortia from the Irish, North and Mediterranean Seas: a mesocosm study.

Authors:  Christoph Gertler; Daniela J Näther; Simone Cappello; Gunnar Gerdts; Richard S Quilliam; Michail M Yakimov; Peter N Golyshin
Journal:  FEMS Microbiol Ecol       Date:  2012-04-23       Impact factor: 4.194

4.  Effects of humic substances and soya lecithin on the aerobic bioremediation of a soil historically contaminated by polycyclic aromatic hydrocarbons (PAHs).

Authors:  Fabio Fava; Sara Berselli; Pellegrino Conte; Alessandro Piccolo; Leonardo Marchetti
Journal:  Biotechnol Bioeng       Date:  2004-10-20       Impact factor: 4.530

5.  Microbial consortia in mesocosm bioremediation trial using oil sorbents, slow-release fertilizer and bioaugmentation.

Authors:  Christoph Gertler; Gunnar Gerdts; Kenneth N Timmis; Peter N Golyshin
Journal:  FEMS Microbiol Ecol       Date:  2009-04-27       Impact factor: 4.194

6.  Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP.

Authors:  Tony Gutierrez; David R Singleton; David Berry; Tingting Yang; Michael D Aitken; Andreas Teske
Journal:  ISME J       Date:  2013-06-20       Impact factor: 10.302

7.  At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies.

Authors:  Kevin E Ashelford; Nadia A Chuzhanova; John C Fry; Antonia J Jones; Andrew J Weightman
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

8.  Role of Bacterial Exopolysaccharides (EPS) in the Fate of the Oil Released during the Deepwater Horizon Oil Spill.

Authors:  Tony Gutierrez; David Berry; Tingting Yang; Sara Mishamandani; Luke McKay; Andreas Teske; Michael D Aitken
Journal:  PLoS One       Date:  2013-06-27       Impact factor: 3.240

9.  From genomics to chemical genomics: new developments in KEGG.

Authors:  Minoru Kanehisa; Susumu Goto; Masahiro Hattori; Kiyoko F Aoki-Kinoshita; Masumi Itoh; Shuichi Kawashima; Toshiaki Katayama; Michihiro Araki; Mika Hirakawa
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

10.  Seabird guano fertilizes Baltic Sea littoral food webs.

Authors:  Karine Gagnon; Eva Rothäusler; Anneli Syrjänen; Maria Yli-Renko; Veijo Jormalainen
Journal:  PLoS One       Date:  2013-04-11       Impact factor: 3.240

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  2 in total

Review 1.  A Review on Biotechnological Approaches Applied for Marine Hydrocarbon Spills Remediation.

Authors:  Farzad Rahmati; Behnam Asgari Lajayer; Najmeh Shadfar; Peter M van Bodegom; Eric D van Hullebusch
Journal:  Microorganisms       Date:  2022-06-25

2.  Degradation Network Reconstruction in Uric Acid and Ammonium Amendments in Oil-Degrading Marine Microcosms Guided by Metagenomic Data.

Authors:  Rafael Bargiela; Christoph Gertler; Mirko Magagnini; Francesca Mapelli; Jianwei Chen; Daniele Daffonchio; Peter N Golyshin; Manuel Ferrer
Journal:  Front Microbiol       Date:  2015-11-24       Impact factor: 5.640

  2 in total

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