Literature DB >> 25914861

APPLYING MACHINE LEARNING TECHNIQUES IN DETECTING BACTERIAL VAGINOSIS.

Yolanda S Baker1, Rajeev Agrawal1, James A Foster2, Daniel Beck2, Gerry Dozier3.   

Abstract

There are several diseases which arise because of changes in the microbial communities in the body. Scientists continue to conduct research in a quest to find the catalysts that provoke these changes in the naturally occurring microbiota. Bacterial Vaginosis (BV) is a disease that fits the above criteria. BV afflicts approximately 29% of women in child bearing age. Unfortunately, its causes are unknown. This paper seeks to uncover the most important features for diagnosis and in turn employ classification algorithms on those features. In order to fulfill our purpose, we conducted two experiments on the data. We isolated the clinical and medical features from the full set of raw data, we compared the accuracy, precision, recall and F-measure and time elapsed for each feature selection and classification grouping. We noticed that classification results were as good or better after performing feature selection although there was a wide range in the number of features produced from the feature selection process. After comparing the experiments, the algorithms performed best on the medical dataset.

Entities:  

Keywords:  Bacterial Vaginosis; Classification; Feature selection; Machine learning

Year:  2014        PMID: 25914861      PMCID: PMC4407517          DOI: 10.1109/ICMLC.2014.7009123

Source DB:  PubMed          Journal:  Proc Int Conf Mach Learn Cybern        ISSN: 2160-133X


  4 in total

1.  Vaginal microbiome of reproductive-age women.

Authors:  Jacques Ravel; Pawel Gajer; Zaid Abdo; G Maria Schneider; Sara S K Koenig; Stacey L McCulle; Shara Karlebach; Reshma Gorle; Jennifer Russell; Carol O Tacket; Rebecca M Brotman; Catherine C Davis; Kevin Ault; Ligia Peralta; Larry J Forney
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-03       Impact factor: 11.205

2.  Bacterial communities in women with bacterial vaginosis: high resolution phylogenetic analyses reveal relationships of microbiota to clinical criteria.

Authors:  Sujatha Srinivasan; Noah G Hoffman; Martin T Morgan; Frederick A Matsen; Tina L Fiedler; Robert W Hall; Frederick J Ross; Connor O McCoy; Roger Bumgarner; Jeanne M Marrazzo; David N Fredricks
Journal:  PLoS One       Date:  2012-06-18       Impact factor: 3.240

3.  Prediction of lung tumor types based on protein attributes by machine learning algorithms.

Authors:  Faezeh Hosseinzadeh; Amir Hossein Kayvanjoo; Mansuor Ebrahimi; Bahram Goliaei
Journal:  Springerplus       Date:  2013-05-24

4.  Machine learning techniques accurately classify microbial communities by bacterial vaginosis characteristics.

Authors:  Daniel Beck; James A Foster
Journal:  PLoS One       Date:  2014-02-03       Impact factor: 3.240

  4 in total

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