| Literature DB >> 25913935 |
Dongwei Zhong1, Mingming Liu2, Yang Cao3, Yelin Zhu4, Shihui Bian5, Jiayi Zhou6, Fengjie Wu7, Kum-Chol Ryu8, Lu Zhou9, Deyong Ye10.
Abstract
Analogues or isosteres of α,γ-diketoacid (DKA) 1a show potent inhibition of hepatitis C virus (HCV) NS5B polymerase through chelation of the two magnesium ions at the active site. The anti-HCV activity of the flavonoid quercetin (2) could partly be attributed to it being a structural mimic of DKAs. In order to delineate the structural features required for the inhibitory effect and improve the anti-HCV potency, two novel types of quercetin analogues, 7-O-arylmethylquercetins and quercetin-3-O-benzoic acid esters, were designed, synthesized and evaluated for their anti-HCV properties in cell-based assays. Among the 38 newly synthesized compounds, 7-O-substituted derivative 3i and 3-O-substituted derivative 4f were found to be the most active in the corresponding series (EC50 = 3.8 μM and 9.0 μΜ, respectively). Docking studies suggested that the quercetin analogues are capable of establishing key coordination with the two magnesium ions as well as interactions with residues at the active site of HCV NS5B.Entities:
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Year: 2015 PMID: 25913935 PMCID: PMC6272327 DOI: 10.3390/molecules20046978
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Structures and activities of α,γ-diketoacids (DKAs) and their analogues or isosteric derivatives.
Figure 2The design of 7-O-arylmethylquercetin derivatives 3 and quercetin-3-O-benzoic acid ester derivatives 4.
Scheme 1Synthesis of the 7-O-substituted quercetin derivatives.
Scheme 2Synthesis of the quercetin-3-O-substituted benzoic acid esters and 3-O-substituted quercetin derivatives.
Anti-HCV activities and cytotoxic effects of quercetin-7-O-substituted derivatives.
| Compound | R | EC50(μM) a,b,c | CC50(μM) c,d | SI e | |
|---|---|---|---|---|---|
| Position | Substituent | ||||
| - | H | 8.7 ± 0.2 | >50 | >5.8 | |
| 2'' | F | 5.0 ± 0.1 | 15.4 ± 0.1 | 3.1 | |
| Cl | 4.8 ± 0.1 | 36.7 ± 0.7 | 7.7 | ||
| Br | 5.5 ± 0.2 | 37.4 ± 0.8 | 6.8 | ||
| CH3 | 4.9 ± 0.6 | 21.7 ± 1.4 | 4.4 | ||
| CN | 7.5 ± 0.5 | 12.6 ± 0.1 | 1.7 | ||
| NO2 | 7.0 ± 1.1 | 14.6 ± 0.5 | 2.1 | ||
| 3'' | F | 6.3 ± 0.2 | 44.5 ± 3.7 | 7.7 | |
| Cl | 3.8 ± 0.2 | 27.2 ± 0.2 | 7.2 | ||
| Br | 4.1 ± 0.3 | 22.3 ± 1.2 | 5.4 | ||
| CH3 | 4.7 ± 0.4 | 32.5 ± 0.7 | 6.9 | ||
| CN | 5.4 ± 0.5 | 10.6 ± 0.5 | 2.0 | ||
| NO2 | 6.6 ± 1.1 | 15.0 ± 0.1 | 2.3 | ||
| 4'' | F | 5.1 ± 0.5 | 31.9 ± 3.4 | 6.2 | |
| Cl | 3.9 ± 0.3 | 15.1 ± 0.1 | 3.9 | ||
| Br | 5.5 ± 1.5 | 35.4 ± 1.6 | 6.4 | ||
| CH3 | 6.7 ± 1.4 | 15.9 ± 1.0 | 2.4 | ||
| CN | 6.2 ± 0.2 | 10.1 ± 0.1 | 1.6 | ||
| NO2 | 4.3 ± 0.2 | 19.6 ± 0.2 | 4.5 | ||
| quercetin | 19.8 | >50 | >2.5 | ||
a The anti-HCV assay was evaluated in an authentic HCV infection system in the human hepatoma cell lines, Huh7.5.1; b Concentration required to inhibit HCV RNA replication by 50%; c The values obtained as the average of duplicate determinations; d Concentration required to reduce cell proliferation by 50%; e Selectivity index: ratio of CC50 to EC50.
Anti-HCV activities and cytotoxic effects of quercetin-3-O-substituted derivatives.
| Compound | R1 | R2 | EC50(μM) a,b,c | CC50(μM) c,d | SI e | |
|---|---|---|---|---|---|---|
| Position | Substituent | |||||
| - | H | - | 14.3 ± 5.1 | >50 | >3.5 | |
| 2'' | F | - | 12.9 ± 3.2 | >50 | >3.9 | |
| NH2 | - | 12.8 ± 2.8 | >50 | >3.9 | ||
| OCH3 | - | 11.7 ± 1.3 | >50 | >4.3 | ||
| CN | - | 20.2 ± 8.6 | >50 | >2.5 | ||
| 3'' | F | - | 9.0 ± 4.5 | >50 | >5.6 | |
| NH2 | - | 21.1 ± 1.3 | >50 | >2.4 | ||
| OCH3 | - | 15.6 ± 0.3 | >50 | >3.2 | ||
| CN | - | 13.1 ± 1.0 | >50 | >3.8 | ||
| Cl | - | 23.0 ± 3.2 | >50 | >3.5 | ||
| 4'' | F | - | 9.7 ± 3.1 | 35.0 ± 2.4 | 3.6 | |
| NH2 | - | 23.8 ± 0.8 | >50 | >2.1 | ||
| OCH3 | - | 13.6 ± 2.1 | 33.9 ± 3.7 | 2.5 | ||
| CN | - | 11.4 ± 2.3 | >50 | >4.4 | ||
| Cl | - | 14.3 ± 2.2 | >50 | >3.5 | ||
| - | - | Me | 11.2 ± 0.1 | >50 | >4.5 | |
| - | - | 38.9 ± 2.5 | 28.8 ± 2.0 | 0.7 | ||
| - | - | (CH2)2OH | 26.3 ± 3.1 | >50 | >1.9 | |
| - | - | (CH2)3CN | >50 | >50 | NA | |
| quercetin | 19.8 | >50 | >2.5 | |||
a The anti-HCV assay was evaluated in an authentic HCV infection system in the human hepatoma cell lines, Huh7.5.1; b Concentration required to inhibit HCV RNA replication by 50%; c The values obtained as the average of duplicate determinations; d Concentration required to reduce cell proliferation by 50%; e Selectivity index: ratio of CC50 to EC50.
Figure 3Predicted binding modes in the active site of a reported X-ray structure of HCV RdRp (PDB code: 1GX6 [22]) from docking studies: (a) quercetin 2; (b) compound 3i; (c) compound 4f. The two Mg2+ ions are indicated as orange spheres, carbon atoms are shown in green, oxygen in red, chlorine in yellow, and fluorine in blue.
| R | R | R | |||
|---|---|---|---|---|---|
| H | |||||
Reagents and conditions: (a) Ac2O, pyridine, reflux, 6 h, 79%; (b) PhSH, imidazole, NMP, 0 °C, 1 h, 70%; (c) R-PhCH2Br, K2CO3, acetone, rt, 3 h; (d) 2M NH3/MeOH, 0 °C, 1 h, 40%–56% (two steps).
| R1 | R1 | R1 | R2 | ||||
|---|---|---|---|---|---|---|---|
| H | 3''-F | 4''-F | Me | ||||
| 2''-F | 3''-NH2 | 4''-NH2 | |||||
| 2''-NH2 | 3''-OCH3 | 4''-OCH3 | (CH2)2OH | ||||
| 2''-OCH3 | 3''-CN | 4''-CN | (CH2)3CN | ||||
| 2''-CN | 3''-Cl | 4''-Cl |
Reagents and conditions: (a) K2CO3, BnBr, DMF, 60 °C, 3 h, then HCl con., ethanol, 70 °C, 2 h, 85%; (b) R1-PhCOOH, EDCI, DMAP, DMF, rt, overnight; (c) H2, Pd/C, 1,4-dioxane/ethanol, rt, 6 h, 40%–79% (two steps); (d) R2Br or R2I, K2CO3, DMF, 40 °C, 3 h.