Literature DB >> 25913527

Snaps and mends: DNA breaks and chromosomal translocations.

Saniya M Javadekar1, Sathees C Raghavan1.   

Abstract

Integrity in entirety is the preferred state of any organism. The temporal and spatial integrity of the genome ensures continued survival of a cell. DNA breakage is the first step towards creation of chromosomal translocations. In this review, we highlight the factors contributing towards the breakage of chromosomal DNA. It has been well-established that the structure and sequence of DNA play a critical role in selective fragility of the genome. Several non-B-DNA structures such as Z-DNA, cruciform DNA, G-quadruplexes, R loops and triplexes have been implicated in generation of genomic fragility leading to translocations. Similarly, specific sequences targeted by proteins such as Recombination Activating Genes and Activation Induced Cytidine Deaminase are involved in translocations. Processes that ensure the integrity of the genome through repair may lead to persistence of breakage and eventually translocations if their actions are anomalous. An insufficient supply of nucleotides and chromatin architecture may also play a critical role. This review focuses on a range of events with the potential to threaten the genomic integrity of a cell, leading to cancer.
© 2015 FEBS.

Entities:  

Keywords:  AID; Chromatin architecture; DNA Repair; DSBs (DNA double strand breaks); RAGs; chromosomal translocations; genomic instability; leukaemia; lymphoma; non-B-DNA structures

Mesh:

Substances:

Year:  2015        PMID: 25913527     DOI: 10.1111/febs.13311

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  15 in total

1.  Effect of dC → d(m5C) substitutions on the folding of intramolecular triplexes with mixed TAT and C+GC base triplets.

Authors:  Carolyn E Carr; Rajkumar Ganugula; Ronald Shikiya; Ana Maria Soto; Luis A Marky
Journal:  Biochimie       Date:  2017-12-24       Impact factor: 4.079

2.  Homologous recombination-mediated repair of DNA double-strand breaks operates in mammalian mitochondria.

Authors:  Sumedha Dahal; Shubham Dubey; Sathees C Raghavan
Journal:  Cell Mol Life Sci       Date:  2017-11-07       Impact factor: 9.261

Review 3.  Modulation of DNA structure formation using small molecules.

Authors:  Imee M A Del Mundo; Karen M Vasquez; Guliang Wang
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2019-09-03       Impact factor: 4.739

Review 4.  Modulation of DNA double-strand break repair as a strategy to improve precise genome editing.

Authors:  Ujjayinee Ray; Sathees C Raghavan
Journal:  Oncogene       Date:  2020-09-03       Impact factor: 9.867

5.  Comprehensive analysis of cancer breakpoints reveals signatures of genetic and epigenetic contribution to cancer genome rearrangements.

Authors:  Kseniia Cheloshkina; Maria Poptsova
Journal:  PLoS Comput Biol       Date:  2021-03-01       Impact factor: 4.475

6.  GNG Motifs Can Replace a GGG Stretch during G-Quadruplex Formation in a Context Dependent Manner.

Authors:  Kohal Das; Mrinal Srivastava; Sathees C Raghavan
Journal:  PLoS One       Date:  2016-07-14       Impact factor: 3.240

7.  Translocation and deletion breakpoints in cancer genomes are associated with potential non-B DNA-forming sequences.

Authors:  Albino Bacolla; John A Tainer; Karen M Vasquez; David N Cooper
Journal:  Nucleic Acids Res       Date:  2016-04-15       Impact factor: 16.971

8.  Alternative DNA structure formation in the mutagenic human c-MYC promoter.

Authors:  Imee Marie A Del Mundo; Maha Zewail-Foote; Sean M Kerwin; Karen M Vasquez
Journal:  Nucleic Acids Res       Date:  2017-05-05       Impact factor: 16.971

Review 9.  The Application of Nucleic Acid Probe-Based Fluorescent Sensing and Imaging in Cancer Diagnosis and Therapy.

Authors:  Ge Huang; Chen Su; Lijuan Wang; Yanxia Fei; Jinfeng Yang
Journal:  Front Chem       Date:  2021-06-01       Impact factor: 5.221

Review 10.  New Perspectives on DNA and RNA Triplexes As Effectors of Biological Activity.

Authors:  Albino Bacolla; Guliang Wang; Karen M Vasquez
Journal:  PLoS Genet       Date:  2015-12-23       Impact factor: 5.917

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