Literature DB >> 25912672

Identification of protein kinase CK2 inhibitors using solvent dipole ordering virtual screening.

Isao Nakanishi1, Katsumi Murata2, Naoya Nagata2, Masakuni Kurono2, Takayoshi Kinoshita3, Misato Yasue2, Takako Miyazaki2, Yoshinori Takei2, Shinya Nakamura4, Atsushi Sakurai4, Nobuko Iwamoto4, Keiji Nishiwaki4, Tetsuko Nakaniwa3, Yusuke Sekiguchi3, Akira Hirasawa2, Gozoh Tsujimoto2, Kazuo Kitaura2.   

Abstract

Novel protein kinase CK2 inhibitors were identified using the solvent dipole ordering virtual screening method. A total of 26 compounds categorized in 15 distinct scaffold classes inhibited greater than 50% of enzyme activity at 50 μM, and eight exhibited IC50 values less than 10 μM. Most of the identified compounds are lead-like and dissimilar to known inhibitors. The crystal structures of two of the CK2 complexes revealed the high accuracy of the predicted binding modes.
Copyright © 2015 Elsevier Masson SAS. All rights reserved.

Entities:  

Keywords:  In silico screening; Kinase inhibitor; Molecular similarity; Protein kinase CK2; Solvent dipole ordering

Mesh:

Substances:

Year:  2015        PMID: 25912672     DOI: 10.1016/j.ejmech.2015.04.032

Source DB:  PubMed          Journal:  Eur J Med Chem        ISSN: 0223-5234            Impact factor:   6.514


  4 in total

1.  Exploring the Pivotal Role of the CK2 Hinge Region Sub-Pocket in Binding with Tricyclic Quinolone Analogues by Computational Analysis.

Authors:  Yue Zhou; Na Zhang; Shan Tang; Xiaoqian Qi; Lijiao Zhao; Rugang Zhong; Yongzhen Peng
Journal:  Molecules       Date:  2017-05-19       Impact factor: 4.411

2.  Collaborative Approach between Explainable Artificial Intelligence and Simplified Chemical Interactions to Explore Active Ligands for Cyclin-Dependent Kinase 2.

Authors:  Tomomi Shimazaki; Masanori Tachikawa
Journal:  ACS Omega       Date:  2022-03-18

3.  A375 melanoma cells are sensitized to cisplatin-induced toxicity by a synthetic nitro-flavone derivative 2-(4-Nitrophenyl)-4H-chromen-4-one through inhibition of PARP1.

Authors:  Anindita Mitra; Rita Ghosh
Journal:  Mol Biol Rep       Date:  2021-08-03       Impact factor: 2.316

4.  Pharmacophore-based virtual screening, synthesis, biological evaluation, and molecular docking study of novel pyrrolizines bearing urea/thiourea moieties with potential cytotoxicity and CDK inhibitory activities.

Authors:  Ahmed M Shawky; Nashwa A Ibrahim; Mohammed A S Abourehab; Ashraf N Abdalla; Ahmed M Gouda
Journal:  J Enzyme Inhib Med Chem       Date:  2021-12       Impact factor: 5.051

  4 in total

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