Literature DB >> 25903876

Unbiased free energy estimates in fast nonequilibrium transformations using Gaussian mixtures.

Piero Procacci1.   

Abstract

In this paper, we present an improved method for obtaining unbiased estimates of the free energy difference between two thermodynamic states using the work distribution measured in nonequilibrium driven experiments connecting these states. The method is based on the assumption that any observed work distribution is given by a mixture of Gaussian distributions, whose normal components are identical in either direction of the nonequilibrium process, with weights regulated by the Crooks theorem. Using the prototypical example for the driven unfolding/folding of deca-alanine, we show that the predicted behavior of the forward and reverse work distributions, assuming a combination of only two Gaussian components with Crooks derived weights, explains surprisingly well the striking asymmetry in the observed distributions at fast pulling speeds. The proposed methodology opens the way for a perfectly parallel implementation of Jarzynski-based free energy calculations in complex systems.

Entities:  

Year:  2015        PMID: 25903876     DOI: 10.1063/1.4918558

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  SAMPL6 host-guest blind predictions using a non equilibrium alchemical approach.

Authors:  Piero Procacci; Massimiliano Guarrasi; Guido Guarnieri
Journal:  J Comput Aided Mol Des       Date:  2018-08-20       Impact factor: 3.686

2.  On the NS-DSSB unidirectional estimates in the SAMPL6 SAMPLing challenge.

Authors:  Piero Procacci; Marina Macchiagodena
Journal:  J Comput Aided Mol Des       Date:  2021-10-09       Impact factor: 3.686

3.  SAMPL7 blind predictions using nonequilibrium alchemical approaches.

Authors:  Piero Procacci; Guido Guarnieri
Journal:  J Comput Aided Mol Des       Date:  2021-01-04       Impact factor: 3.686

4.  Virtual Double-System Single-Box: A Nonequilibrium Alchemical Technique for Absolute Binding Free Energy Calculations: Application to Ligands of the SARS-CoV-2 Main Protease.

Authors:  Marina Macchiagodena; Marco Pagliai; Maurice Karrenbrock; Guido Guarnieri; Francesco Iannone; Piero Procacci
Journal:  J Chem Theory Comput       Date:  2020-10-22       Impact factor: 6.006

  4 in total

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