Literature DB >> 25903011

Perspectives on external electric fields in molecular simulation: progress, prospects and challenges.

Niall J English1, Conor J Waldron.   

Abstract

In this review, the application of a wide variety of external electric fields in molecular simulation shall be discussed, including time-varying and electromagnetic, as well as the utility and potential impact and prospects for exploitation of such simulations for real-world and industrial end use. In particular, non-equilibrium molecular dynamics will be discussed, as well as challenges in addressing adequate thermostatting and scaling field amplitudes to more experimentally relevant levels. Attention shall be devoted to recent progress and advances in external fields in ab initio molecular simulation and dynamics, as well as elusive challenges thereof (and, to some extent, for molecular dynamics from empirical potentials), such as timescales required to observe low-frequency and intensity field effects. The challenge of deterministic molecular dynamics in external fields in sampling phase space shall be discussed, along with prospects for application of fields in enhanced-sampling simulations. Finally, the application of external electric fields to a wide variety of aqueous, nanoscale and biological systems will be discussed, often motivated by the possibility of exploitation in real-world applications, which serve to underpin our molecular-level understanding of field effects in terms of microscopic mechanisms, and possibly with a view to control thereof.

Mesh:

Year:  2015        PMID: 25903011     DOI: 10.1039/c5cp00629e

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  14 in total

1.  Microwave effects on NiMoS and CoMoS single-sheet catalysts.

Authors:  I Borges; Alexander M Silva; Lucas Modesto-Costa
Journal:  J Mol Model       Date:  2018-05-04       Impact factor: 1.810

2.  Enhancement of the local asymmetry in the hydrogen bond network of liquid water by an ultrafast electric field pulse.

Authors:  Hossam Elgabarty; Naveen Kumar Kaliannan; Thomas D Kühne
Journal:  Sci Rep       Date:  2019-07-10       Impact factor: 4.379

3.  Possibility of realizing superionic ice VII in external electric fields of planetary bodies.

Authors:  Zdenek Futera; John S Tse; Niall J English
Journal:  Sci Adv       Date:  2020-05-22       Impact factor: 14.136

4.  Molecular dynamics simulation of the nanosecond pulsed electric field effect on kinesin nanomotor.

Authors:  Jiří Průša; Michal Cifra
Journal:  Sci Rep       Date:  2019-12-23       Impact factor: 4.379

5.  Ab Initio Molecular Dynamics Study of Methanol-Water Mixtures under External Electric Fields.

Authors:  Giuseppe Cassone; Adriano Sofia; Jiri Sponer; A Marco Saitta; Franz Saija
Journal:  Molecules       Date:  2020-07-24       Impact factor: 4.411

6.  Electro-opening of a microtubule lattice in silico.

Authors:  Jiří Průša; Ahmed Taha Ayoub; Djamel Eddine Chafai; Daniel Havelka; Michal Cifra
Journal:  Comput Struct Biotechnol J       Date:  2021-03-04       Impact factor: 7.271

7.  Reproducibility in the unfolding process of protein induced by an external electric field.

Authors:  Anna Sinelnikova; Thomas Mandl; Christofer Östlin; Oscar Grånäs; Maxim N Brodmerkel; Erik G Marklund; Carl Caleman
Journal:  Chem Sci       Date:  2020-12-26       Impact factor: 9.825

8.  Human Aquaporin 4 Gating Dynamics under Perpendicularly-Oriented Electric-Field Impulses: A Molecular Dynamics Study.

Authors:  Paolo Marracino; Micaela Liberti; Erika Trapani; Christian J Burnham; Massimiliano Avena; José-Antonio Garate; Francesca Apollonio; Niall J English
Journal:  Int J Mol Sci       Date:  2016-07-14       Impact factor: 5.923

9.  Polyelectrolyte in Electric Field: Disparate Conformational Behavior along an Aminopolysaccharide Chain.

Authors:  Paween Mahinthichaichan; Cheng-Chieh Tsai; Gregory F Payne; Jana Shen
Journal:  ACS Omega       Date:  2020-05-19

10.  Electrostrictive Cavitation in Water Induced by a SnO2 Nanoparticle.

Authors:  Shane Jackson; Aiichiro Nakano; Priya Vashishta; Rajiv K Kalia
Journal:  ACS Omega       Date:  2019-12-18
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