Literature DB >> 25901039

Integrated metabolomics and genomics: systems approaches to biomarkers and mechanisms of cardiovascular disease.

Svati H Shah1, Christopher B Newgard2.   

Abstract

The genetic architecture underlying the heritability of cardiovascular disease is incompletely understood. Metabolomics is an emerging technology platform that has shown early success in identifying biomarkers and mechanisms of common chronic diseases. Integration of metabolomics, genetics, and other omics platforms in a systems biology approach holds potential for elucidating novel genetic markers and mechanisms for cardiovascular disease. We review important studies that have used metabolomic profiling in cardiometabolic diseases, approaches for integrating metabolomics with genetics and other molecular profiling platforms, and key studies showing the potential for such studies in deciphering cardiovascular disease genetics, biomarkers, and mechanisms.
© 2015 American Heart Association, Inc.

Entities:  

Keywords:  genomics; metabolism; metabolomics; risk factor

Mesh:

Substances:

Year:  2015        PMID: 25901039      PMCID: PMC4408557          DOI: 10.1161/CIRCGENETICS.114.000223

Source DB:  PubMed          Journal:  Circ Cardiovasc Genet        ISSN: 1942-3268


  50 in total

1.  Polymorphisms associated with cholesterol and risk of cardiovascular events.

Authors:  Sekar Kathiresan; Olle Melander; Dragi Anevski; Candace Guiducci; Noël P Burtt; Charlotta Roos; Joel N Hirschhorn; Göran Berglund; Bo Hedblad; Leif Groop; David M Altshuler; Christopher Newton-Cheh; Marju Orho-Melander
Journal:  N Engl J Med       Date:  2008-03-20       Impact factor: 91.245

2.  Validation of the association between a branched chain amino acid metabolite profile and extremes of coronary artery disease in patients referred for cardiac catheterization.

Authors:  Sayanti Bhattacharya; Christopher B Granger; Damian Craig; Carol Haynes; James Bain; Robert D Stevens; Elizabeth R Hauser; Christopher B Newgard; William E Kraus; L Kristin Newby; Svati H Shah
Journal:  Atherosclerosis       Date:  2013-11-12       Impact factor: 5.162

3.  Metabolite profiling of blood from individuals undergoing planned myocardial infarction reveals early markers of myocardial injury.

Authors:  Gregory D Lewis; Ru Wei; Emerson Liu; Elaine Yang; Xu Shi; Maryann Martinovic; Laurie Farrell; Aarti Asnani; Marcoli Cyrille; Arvind Ramanathan; Oded Shaham; Gabriel Berriz; Patricia A Lowry; Igor F Palacios; Murat Taşan; Frederick P Roth; Jiangyong Min; Christian Baumgartner; Hasmik Keshishian; Terri Addona; Vamsi K Mootha; Anthony Rosenzweig; Steven A Carr; Michael A Fifer; Marc S Sabatine; Robert E Gerszten
Journal:  J Clin Invest       Date:  2008-10       Impact factor: 14.808

Review 4.  Application of metabolomics to cardiovascular biomarker and pathway discovery.

Authors:  Gregory D Lewis; Aarti Asnani; Robert E Gerszten
Journal:  J Am Coll Cardiol       Date:  2008-07-08       Impact factor: 24.094

5.  Overexpression of vascular endothelial growth factor-B in mouse heart alters cardiac lipid metabolism and induces myocardial hypertrophy.

Authors:  Terhi Karpanen; Maija Bry; Hanna M Ollila; Tuulikki Seppänen-Laakso; Erkki Liimatta; Hanna Leskinen; Riikka Kivelä; Teemu Helkamaa; Mari Merentie; Michael Jeltsch; Karri Paavonen; Leif C Andersson; Eero Mervaala; Ilmo E Hassinen; Seppo Ylä-Herttuala; Matej Oresic; Kari Alitalo
Journal:  Circ Res       Date:  2008-08-28       Impact factor: 17.367

6.  Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.

Authors:  Christian Gieger; Ludwig Geistlinger; Elisabeth Altmaier; Martin Hrabé de Angelis; Florian Kronenberg; Thomas Meitinger; Hans-Werner Mewes; H-Erich Wichmann; Klaus M Weinberger; Jerzy Adamski; Thomas Illig; Karsten Suhre
Journal:  PLoS Genet       Date:  2008-11-28       Impact factor: 5.917

7.  Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis.

Authors:  Robert A Koeth; Zeneng Wang; Bruce S Levison; Jennifer A Buffa; Elin Org; Brendan T Sheehy; Earl B Britt; Xiaoming Fu; Yuping Wu; Lin Li; Jonathan D Smith; Joseph A DiDonato; Jun Chen; Hongzhe Li; Gary D Wu; James D Lewis; Manya Warrier; J Mark Brown; Ronald M Krauss; W H Wilson Tang; Frederic D Bushman; Aldons J Lusis; Stanley L Hazen
Journal:  Nat Med       Date:  2013-04-07       Impact factor: 53.440

8.  Metabolic profiling of the human response to a glucose challenge reveals distinct axes of insulin sensitivity.

Authors:  Oded Shaham; Ru Wei; Thomas J Wang; Catherine Ricciardi; Gregory D Lewis; Ramachandran S Vasan; Steven A Carr; Ravi Thadhani; Robert E Gerszten; Vamsi K Mootha
Journal:  Mol Syst Biol       Date:  2008-08-05       Impact factor: 11.429

9.  Genetic networks of liver metabolism revealed by integration of metabolic and transcriptional profiling.

Authors:  Christine T Ferrara; Ping Wang; Elias Chaibub Neto; Robert D Stevens; James R Bain; Brett R Wenner; Olga R Ilkayeva; Mark P Keller; Daniel A Blasiole; Christina Kendziorski; Brian S Yandell; Christopher B Newgard; Alan D Attie
Journal:  PLoS Genet       Date:  2008-03-14       Impact factor: 5.917

10.  An atlas of genetic influences on human blood metabolites.

Authors:  So-Youn Shin; Eric B Fauman; Ann-Kristin Petersen; Jan Krumsiek; Rita Santos; Jie Huang; Matthias Arnold; Idil Erte; Vincenzo Forgetta; Tsun-Po Yang; Klaudia Walter; Cristina Menni; Lu Chen; Louella Vasquez; Ana M Valdes; Craig L Hyde; Vicky Wang; Daniel Ziemek; Phoebe Roberts; Li Xi; Elin Grundberg; Melanie Waldenberger; J Brent Richards; Robert P Mohney; Michael V Milburn; Sally L John; Jeff Trimmer; Fabian J Theis; John P Overington; Karsten Suhre; M Julia Brosnan; Christian Gieger; Gabi Kastenmüller; Tim D Spector; Nicole Soranzo
Journal:  Nat Genet       Date:  2014-05-11       Impact factor: 38.330

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  31 in total

Review 1.  Precision medicine in cardiology.

Authors:  Elliott M Antman; Joseph Loscalzo
Journal:  Nat Rev Cardiol       Date:  2016-06-30       Impact factor: 32.419

2.  Reproducibility of non-fasting plasma metabolomics measurements across processing delays.

Authors:  Ying Wang; Brian D Carter; Susan M Gapstur; Marjorie L McCullough; Mia M Gaudet; Victoria L Stevens
Journal:  Metabolomics       Date:  2018-09-25       Impact factor: 4.290

Review 3.  Interdisciplinary Models for Research and Clinical Endeavors in Genomic Medicine: A Scientific Statement From the American Heart Association.

Authors:  Kiran Musunuru; Pankaj Arora; John P Cooke; Jane F Ferguson; Ray E Hershberger; Kathleen T Hickey; Jin-Moo Lee; João A C Lima; Joseph Loscalzo; Naveen L Pereira; Mark W Russell; Svati H Shah; Farah Sheikh; Thomas J Wang; Calum A MacRae
Journal:  Circ Genom Precis Med       Date:  2018-06

Review 4.  Potential Impact and Study Considerations of Metabolomics in Cardiovascular Health and Disease: A Scientific Statement From the American Heart Association.

Authors:  Susan Cheng; Svati H Shah; Elizabeth J Corwin; Oliver Fiehn; Robert L Fitzgerald; Robert E Gerszten; Thomas Illig; Eugene P Rhee; Pothur R Srinivas; Thomas J Wang; Mohit Jain
Journal:  Circ Cardiovasc Genet       Date:  2017-04

Review 5.  Cardiovascular Metabolomics.

Authors:  Robert W McGarrah; Scott B Crown; Guo-Fang Zhang; Svati H Shah; Christopher B Newgard
Journal:  Circ Res       Date:  2018-04-27       Impact factor: 17.367

6.  Prognostic Implications of Long-Chain Acylcarnitines in Heart Failure and Reversibility With Mechanical Circulatory Support.

Authors:  Tariq Ahmad; Jacob P Kelly; Robert W McGarrah; Anne S Hellkamp; Mona Fiuzat; Jeffrey M Testani; Teresa S Wang; Amanda Verma; Marc D Samsky; Mark P Donahue; Olga R Ilkayeva; Dawn E Bowles; Chetan B Patel; Carmelo A Milano; Joseph G Rogers; G Michael Felker; Christopher M O'Connor; Svati H Shah; William E Kraus
Journal:  J Am Coll Cardiol       Date:  2016-01-26       Impact factor: 24.094

Review 7.  Metabolites as regulators of insulin sensitivity and metabolism.

Authors:  Qin Yang; Archana Vijayakumar; Barbara B Kahn
Journal:  Nat Rev Mol Cell Biol       Date:  2018-10       Impact factor: 94.444

Review 8.  Metabolic Dysfunction in Heart Failure: Diagnostic, Prognostic, and Pathophysiologic Insights From Metabolomic Profiling.

Authors:  Wynn G Hunter; Jacob P Kelly; Robert W McGarrah; William E Kraus; Svati H Shah
Journal:  Curr Heart Fail Rep       Date:  2016-06

9.  The Consortium of Metabolomics Studies (COMETS): Metabolomics in 47 Prospective Cohort Studies.

Authors:  Bing Yu; Krista A Zanetti; Marinella Temprosa; Demetrius Albanes; Nathan Appel; Clara Barrios Barrera; Yoav Ben-Shlomo; Eric Boerwinkle; Juan P Casas; Clary Clish; Caroline Dale; Abbas Dehghan; Andriy Derkach; A Heather Eliassen; Paul Elliott; Eoin Fahy; Christian Gieger; Marc J Gunter; Sei Harada; Tamara Harris; Deron R Herr; David Herrington; Joel N Hirschhorn; Elise Hoover; Ann W Hsing; Mattias Johansson; Rachel S Kelly; Chin Meng Khoo; Mika Kivimäki; Bruce S Kristal; Claudia Langenberg; Jessica Lasky-Su; Deborah A Lawlor; Luca A Lotta; Massimo Mangino; Loïc Le Marchand; Ewy Mathé; Charles E Matthews; Cristina Menni; Lorelei A Mucci; Rachel Murphy; Matej Oresic; Eric Orwoll; Jennifer Ose; Alexandre C Pereira; Mary C Playdon; Lucilla Poston; Jackie Price; Qibin Qi; Kathryn Rexrode; Adam Risch; Joshua Sampson; Wei Jie Seow; Howard D Sesso; Svati H Shah; Xiao-Ou Shu; Gordon C S Smith; Ulla Sovio; Victoria L Stevens; Rachael Stolzenberg-Solomon; Toru Takebayashi; Therese Tillin; Ruth Travis; Ioanna Tzoulaki; Cornelia M Ulrich; Ramachandran S Vasan; Mukesh Verma; Ying Wang; Nick J Wareham; Andrew Wong; Naji Younes; Hua Zhao; Wei Zheng; Steven C Moore
Journal:  Am J Epidemiol       Date:  2019-06-01       Impact factor: 4.897

Review 10.  Inflammatory processes in cardiovascular disease: a route to targeted therapies.

Authors:  Neil Ruparelia; Joshua T Chai; Edward A Fisher; Robin P Choudhury
Journal:  Nat Rev Cardiol       Date:  2016-12-01       Impact factor: 32.419

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