Literature DB >> 25900648

Highly discriminatory capacity of the PowerPlex(®) Y23 System for the study of isolated populations.

Carolina Nuñez1, Miriam Baeta1, Miriam Fernández1, Maite Zarrabeitia2, Begoña Martinez-Jarreta3, Marian M de Pancorbo4.   

Abstract

In order to evaluate the forensic utility of the new PowerPlex(®) Y23 System, two Northern Spanish populations, the autochthonous Basque Country (N=105) and Cantabria (N=98), were typed. Two of the new markers incorporated in the panel, the rapid mutating loci DYS576 and DYS570, were among the most discriminative markers in both population datasets. In terms of the analysis of 23 Y-STRs, the two populations showed high haplotype diversities, with values slightly superior in the population of Cantabria (1±0.0015) than in the Basque Country (0.9987±0.0016). The comparison of the discrimination capacity obtained with the analysis of 23 Y-STRs and other available markers sets of 12 Y-STRs (PowerPlex(®) Y System) or 17 Y-STRs (YFiler™), clearly demonstrated an improvement in the population of the Basque Country. Nevertheless, in Cantabria this augment was only seen when the number of markers was increased from 12 to 23, since the study of 17 Y-STRs was enough to differentiate all haplotypes. Therefore, this study shows that the improvement in forensic parameters by increasing the number of Y-STR markers analyzed is much more pronounced in the case of isolated populations such as the autochthonous population of the Basque Country, as it facilitates the differentiation among similar haplotypes. Moreover, by the use of the PowerPlex(®) Y23 identification of population specific haplotypes increased in both populations. Ultimately, the analysis of 23 Y-STRs differentiated among the two geographically close populations of Basque Country and Cantabria. Indeed it showed significant differences between the Basque Country population and all European populations included, meanwhile Cantabria did exhibit significant proximity with the Iberian and the majority of European populations considered.
Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Keywords:  Basque Country; Cantabria; PowerPlex(®) Y23 System; Short tandem repeats; Y chromosome

Mesh:

Year:  2015        PMID: 25900648     DOI: 10.1016/j.fsigen.2015.04.005

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  6 in total

1.  Analysis of four novel X-chromosomal short tandem repeats within 71 kb of the Xp22.3 region.

Authors:  Takeki Nishi; Kenji Fukui; Kimiharu Iwadate
Journal:  Int J Legal Med       Date:  2017-02-27       Impact factor: 2.686

2.  Novel Y-chromosome short tandem repeat sequence variation for loci DYS710, DYS518, DYS385, DYS644, DYS612, DYS626, DYS504, DYS481, DYS447 and DYS449.

Authors:  Mohaimin Kasu; Jamie Fredericks; Mischa Fraser; Christiaan Labuschagne; Mpasi Lesaoana; Maria Eugenia D'Amato
Journal:  Int J Legal Med       Date:  2019-04-13       Impact factor: 2.686

3.  Genetic structure in the paternal lineages of South East Spain revealed by the analysis of 17 Y-STRs.

Authors:  María Saiz; Maria Jesus Alvarez-Cubero; José Antonio Lorente; Juan Carlos Alvarez; Luis Javier Martinez-Gonzalez
Journal:  Sci Rep       Date:  2019-03-26       Impact factor: 4.379

4.  Analysis of the R1b-DF27 haplogroup shows that a large fraction of Iberian Y-chromosome lineages originated recently in situ.

Authors:  Neus Solé-Morata; Patricia Villaescusa; Carla García-Fernández; Neus Font-Porterias; María José Illescas; Laura Valverde; Francesca Tassi; Silvia Ghirotto; Claude Férec; Karen Rouault; Susana Jiménez-Moreno; Begoña Martínez-Jarreta; Maria Fátima Pinheiro; María T Zarrabeitia; Ángel Carracedo; Marian M de Pancorbo; Francesc Calafell
Journal:  Sci Rep       Date:  2017-08-04       Impact factor: 4.379

5.  A comprehensive portrait of Y-STR diversity of Indian populations and comparison with 129 worldwide populations.

Authors:  Mugdha Singh; Anujit Sarkar; Madhusudan R Nandineni
Journal:  Sci Rep       Date:  2018-10-18       Impact factor: 4.379

6.  The Y chromosome of autochthonous Basque populations and the Bronze Age replacement.

Authors:  Javier Rodriguez Luis; Leire Palencia-Madrid; Vivian C Mendoza; Ralph Garcia-Bertrand; Marian M de Pancorbo; Rene J Herrera
Journal:  Sci Rep       Date:  2021-03-10       Impact factor: 4.379

  6 in total

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