Literature DB >> 25894361

In silico identification of targets for a novel scaffold, 2-thiazolylimino-5-benzylidin-thiazolidin-4-one.

Poornima Iyer1, Jahnavi Bolla1, Vivek Kumar1, Manjinder Singh Gill2, M Elizabeth Sobhia3.   

Abstract

Thiazolidinone derivatives have been found to exhibit a wide range of pharmacological activities. 2-Thiazolylimino-5-benzylidene-thiazolidin-4-one derivatives show antibacterial activity in in vitro tests which are comparable to marketed drugs. However, the target for this scaffold remains yet to be identified. In our work, we identified seven putative targets for this scaffold using web servers such as DRAR-CPI, PharmMapper, and TarFisDock and databases such as BindingDB and ChEMBL. Each of these servers used different algorithms and scoring functions for protein target identification. Further, these targets are substantiated by molecular docking analysis. Based on the docking studies, scaffold 2-thiazolylimino-5-benzylidene-thiazolidin-4-one is observed to exhibit affinity against diverse targets, particularly, towards COX-2, acetylcholinesterase, aldose reductase, and thyroid hormone receptor alpha. This study describes an initial probability that these proteins may be targeted by this scaffold.

Entities:  

Keywords:  BindingDB; DRAR-CPI; PharmMapper; TarFisDock; vROCS

Mesh:

Substances:

Year:  2015        PMID: 25894361     DOI: 10.1007/s11030-015-9578-2

Source DB:  PubMed          Journal:  Mol Divers        ISSN: 1381-1991            Impact factor:   2.943


  23 in total

1.  Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy.

Authors:  Richard A Friesner; Jay L Banks; Robert B Murphy; Thomas A Halgren; Jasna J Klicic; Daniel T Mainz; Matthew P Repasky; Eric H Knoll; Mee Shelley; Jason K Perry; David E Shaw; Perry Francis; Peter S Shenkin
Journal:  J Med Chem       Date:  2004-03-25       Impact factor: 7.446

2.  Target validation: A door to drug discovery.

Authors:  X P Chen; G H Du
Journal:  Drug Discov Ther       Date:  2007-08

3.  Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.

Authors:  Alasdair T R Laurie; Richard M Jackson
Journal:  Bioinformatics       Date:  2005-02-08       Impact factor: 6.937

Review 4.  4-thiazolidinone--a biologically active scaffold.

Authors:  Amit Verma; Shailendra K Saraf
Journal:  Eur J Med Chem       Date:  2007-08-06       Impact factor: 6.514

5.  Synthesis and antimicrobial activity of novel 2-thiazolylimino-5-arylidene-4-thiazolidinones.

Authors:  Paola Vicini; Athina Geronikaki; Kitka Anastasia; Matteo Incerti; Franca Zani
Journal:  Bioorg Med Chem       Date:  2006-02-20       Impact factor: 3.641

6.  Fragment-based design, docking, synthesis, biological evaluation and structure-activity relationships of 2-benzo/benzisothiazolimino-5-aryliden-4-thiazolidinones as cycloxygenase/lipoxygenase inhibitors.

Authors:  Phaedra Eleftheriou; Athina Geronikaki; Dimitra Hadjipavlou-Litina; Paola Vicini; Olga Filz; Dmitry Filimonov; Vladimir Poroikov; Shailendra S Chaudhaery; Kuldeep K Roy; Anil K Saxena
Journal:  Eur J Med Chem       Date:  2011-10-25       Impact factor: 6.514

7.  PharmMapper server: a web server for potential drug target identification using pharmacophore mapping approach.

Authors:  Xiaofeng Liu; Sisheng Ouyang; Biao Yu; Yabo Liu; Kai Huang; Jiayu Gong; Siyuan Zheng; Zhihua Li; Honglin Li; Hualiang Jiang
Journal:  Nucleic Acids Res       Date:  2010-04-29       Impact factor: 16.971

8.  Computer-aided discovery of anti-inflammatory thiazolidinones with dual cyclooxygenase/lipoxygenase inhibition.

Authors:  Athina A Geronikaki; Alexey A Lagunin; Dimitra I Hadjipavlou-Litina; Phaedra T Eleftheriou; Dmitrii A Filimonov; Vladimir V Poroikov; Intekhab Alam; Anil K Saxena
Journal:  J Med Chem       Date:  2008-02-27       Impact factor: 7.446

9.  Functional group and substructure searching as a tool in metabolomics.

Authors:  Masaaki Kotera; Andrew G McDonald; Sinéad Boyce; Keith F Tipton
Journal:  PLoS One       Date:  2008-02-06       Impact factor: 3.240

10.  PDTD: a web-accessible protein database for drug target identification.

Authors:  Zhenting Gao; Honglin Li; Hailei Zhang; Xiaofeng Liu; Ling Kang; Xiaomin Luo; Weiliang Zhu; Kaixian Chen; Xicheng Wang; Hualiang Jiang
Journal:  BMC Bioinformatics       Date:  2008-02-19       Impact factor: 3.169

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  2 in total

1.  Discovery of the molecular mechanisms of the novel chalcone-based Magnaporthe oryzae inhibitor C1 using transcriptomic profiling and co-expression network analysis.

Authors:  Hui Chen; Xiaoyun Wang; Hong Jin; Rui Liu; Taiping Hou
Journal:  Springerplus       Date:  2016-10-22

Review 2.  Reverse Screening Methods to Search for the Protein Targets of Chemopreventive Compounds.

Authors:  Hongbin Huang; Guigui Zhang; Yuquan Zhou; Chenru Lin; Suling Chen; Yutong Lin; Shangkang Mai; Zunnan Huang
Journal:  Front Chem       Date:  2018-05-09       Impact factor: 5.221

  2 in total

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