Literature DB >> 25891169

Systems medicine: evolution of systems biology from bench to bedside.

Rui-Sheng Wang1, Bradley A Maron1,2, Joseph Loscalzo1.   

Abstract

High-throughput experimental techniques for generating genomes, transcriptomes, proteomes, metabolomes, and interactomes have provided unprecedented opportunities to interrogate biological systems and human diseases on a global level. Systems biology integrates the mass of heterogeneous high-throughput data and predictive computational modeling to understand biological functions as system-level properties. Most human diseases are biological states caused by multiple components of perturbed pathways and regulatory networks rather than individual failing components. Systems biology not only facilitates basic biological research but also provides new avenues through which to understand human diseases, identify diagnostic biomarkers, and develop disease treatments. At the same time, systems biology seeks to assist in drug discovery, drug optimization, drug combinations, and drug repositioning by investigating the molecular mechanisms of action of drugs at a system's level. Indeed, systems biology is evolving to systems medicine as a new discipline that aims to offer new approaches for addressing the diagnosis and treatment of major human diseases uniquely, effectively, and with personalized precision.
© 2015 Wiley Periodicals, Inc.

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Year:  2015        PMID: 25891169      PMCID: PMC4457580          DOI: 10.1002/wsbm.1297

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Syst Biol Med        ISSN: 1939-005X


  118 in total

1.  Predicting adverse drug events using pharmacological network models.

Authors:  Aurel Cami; Alana Arnold; Shannon Manzi; Ben Reis
Journal:  Sci Transl Med       Date:  2011-12-21       Impact factor: 17.956

2.  Protein labeling by iTRAQ: a new tool for quantitative mass spectrometry in proteome research.

Authors:  Sebastian Wiese; Kai A Reidegeld; Helmut E Meyer; Bettina Warscheid
Journal:  Proteomics       Date:  2007-02       Impact factor: 3.984

Review 3.  Molecular networks as sensors and drivers of common human diseases.

Authors:  Eric E Schadt
Journal:  Nature       Date:  2009-09-10       Impact factor: 49.962

4.  Kinase substrate interactions.

Authors:  Michael G Smith; Jason Ptacek; Michael Snyder
Journal:  Methods Mol Biol       Date:  2011

5.  Data-driven prediction of drug effects and interactions.

Authors:  Nicholas P Tatonetti; Patrick P Ye; Roxana Daneshjou; Russ B Altman
Journal:  Sci Transl Med       Date:  2012-03-14       Impact factor: 17.956

6.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

Review 7.  RNA-Seq: a revolutionary tool for transcriptomics.

Authors:  Zhong Wang; Mark Gerstein; Michael Snyder
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

8.  A quantitative liposome microarray to systematically characterize protein-lipid interactions.

Authors:  Antoine-Emmanuel Saliba; Ivana Vonkova; Stefano Ceschia; Greg M Findlay; Kenji Maeda; Christian Tischer; Samy Deghou; Vera van Noort; Peer Bork; Tony Pawson; Jan Ellenberg; Anne-Claude Gavin
Journal:  Nat Methods       Date:  2013-11-24       Impact factor: 28.547

9.  The clinical applications of a systems approach.

Authors:  Andrew C Ahn; Muneesh Tewari; Chi-Sang Poon; Russell S Phillips
Journal:  PLoS Med       Date:  2006-05-23       Impact factor: 11.069

10.  starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data.

Authors:  Jun-Hao Li; Shun Liu; Hui Zhou; Liang-Hu Qu; Jian-Hua Yang
Journal:  Nucleic Acids Res       Date:  2013-12-01       Impact factor: 16.971

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  25 in total

Review 1.  Precision medicine in cardiology.

Authors:  Elliott M Antman; Joseph Loscalzo
Journal:  Nat Rev Cardiol       Date:  2016-06-30       Impact factor: 32.419

Review 2.  Novel approaches to pulmonary arterial hypertension drug discovery.

Authors:  Yon K Sung; Ke Yuan; Vinicio A de Jesus Perez
Journal:  Expert Opin Drug Discov       Date:  2016-02-27       Impact factor: 6.098

Review 3.  Translational Advances in the Field of Pulmonary Hypertension. Focusing on Developmental Origins and Disease Inception for the Prevention of Pulmonary Hypertension.

Authors:  Bradley A Maron; Steven H Abman
Journal:  Am J Respir Crit Care Med       Date:  2017-02-01       Impact factor: 21.405

4.  Translational Advances in the Field of Pulmonary Hypertension Molecular Medicine of Pulmonary Arterial Hypertension. From Population Genetics to Precision Medicine and Gene Editing.

Authors:  Eric D Austin; James West; James E Loyd; Anna R Hemnes
Journal:  Am J Respir Crit Care Med       Date:  2017-01-01       Impact factor: 21.405

Review 5.  Systems Biology Approaches to Redox Metabolism in Stress and Disease States.

Authors:  Rui-Sheng Wang; William M Oldham; Bradley A Maron; Joseph Loscalzo
Journal:  Antioxid Redox Signal       Date:  2017-12-20       Impact factor: 8.401

Review 6.  Translating Knowledge Into Therapy for Acute Kidney Injury.

Authors:  Mark de Caestecker; Raymond Harris
Journal:  Semin Nephrol       Date:  2018-01       Impact factor: 5.299

7.  Network Analysis of the Multidimensional Symptom Experience of Oncology.

Authors:  Nikolaos Papachristou; Payam Barnaghi; Bruce Cooper; Kord M Kober; Roma Maguire; Steven M Paul; Marilyn Hammer; Fay Wright; Jo Armes; Eileen P Furlong; Lisa McCann; Yvette P Conley; Elisabeth Patiraki; Stylianos Katsaragakis; Jon D Levine; Christine Miaskowski
Journal:  Sci Rep       Date:  2019-02-19       Impact factor: 4.379

8.  Network analysis of the genomic basis of the placebo effect.

Authors:  Rui-Sheng Wang; Kathryn T Hall; Franco Giulianini; Dani Passow; Ted J Kaptchuk; Joseph Loscalzo
Journal:  JCI Insight       Date:  2017-06-02

9.  Pathway Analysis for Cancer Research and Precision Oncology Applications.

Authors:  Alessandro La Ferlita; Salvatore Alaimo; Alfredo Ferro; Alfredo Pulvirenti
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 2.622

Review 10.  Pharmacogenetics: Implications for Modern Type 2 Diabetes Therapy.

Authors:  Harald Staiger; Elke Schaeffeler; Matthias Schwab; Hans-Ulrich Häring
Journal:  Rev Diabet Stud       Date:  2016-02-10
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