Literature DB >> 25879384

The tale of RNA G-quadruplex.

Prachi Agarwala1, Satyaprakash Pandey, Souvik Maiti.   

Abstract

G-quadruplexes are non-canonical secondary structures found in guanine rich regions of DNA and RNA. Reports have indicated the wide occurrence of RNA G-quadruplexes across the transcriptome in various regions of mRNAs and non-coding RNAs. RNA G-quadruplexes have been implicated in playing an important role in translational regulation, mRNA processing events and maintenance of chromosomal end integrity. In this review, we summarize the structural and functional aspects of RNA G-quadruplexes with emphasis on recent progress to understand the protein/trans factors binding these motifs. With the revelation of the importance of these secondary structures as regulatory modules in biology, we have also evaluated the various advancements towards targeting these structures and the challenges associated with them. Apart from this, numerous potential applications of this secondary motif have also been discussed.

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Year:  2015        PMID: 25879384     DOI: 10.1039/c4ob02681k

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  45 in total

Review 1.  New Insights into the Functions of Nucleic Acids Controlled by Cellular Microenvironments.

Authors:  Saki Matsumoto; Naoki Sugimoto
Journal:  Top Curr Chem (Cham)       Date:  2021-03-30

2.  Human DDX21 binds and unwinds RNA guanine quadruplexes.

Authors:  Ewan K S McRae; Evan P Booy; Aniel Moya-Torres; Peyman Ezzati; Jörg Stetefeld; Sean A McKenna
Journal:  Nucleic Acids Res       Date:  2017-06-20       Impact factor: 16.971

3.  Proximal disruptor aided ligation (ProDAL) of kilobase-long RNAs.

Authors:  Alexander Zhovmer; Xiaohui Qu
Journal:  RNA Biol       Date:  2016-05-21       Impact factor: 4.652

Review 4.  The effects of structure on pre-mRNA processing and stability.

Authors:  Rachel Soemedi; Kamil J Cygan; Christy L Rhine; David T Glidden; Allison J Taggart; Chien-Ling Lin; Alger M Fredericks; William G Fairbrother
Journal:  Methods       Date:  2017-06-06       Impact factor: 3.608

5.  Structure specific recognition of telomeric repeats containing RNA by the RGG-box of hnRNPA1.

Authors:  Meenakshi Ghosh; Mahavir Singh
Journal:  Nucleic Acids Res       Date:  2020-05-07       Impact factor: 16.971

6.  Recognition of G-quadruplex RNA by a crucial RNA methyltransferase component, METTL14.

Authors:  Atsuhiro Yoshida; Takanori Oyoshi; Akiyo Suda; Shiroh Futaki; Miki Imanishi
Journal:  Nucleic Acids Res       Date:  2022-01-11       Impact factor: 16.971

7.  Alternative splicing modulation mediated by G-quadruplex structures in MALAT1 lncRNA.

Authors:  Arpita Ghosh; Satya Prakash Pandey; Asgar Hussain Ansari; Jennifer Seematti Sundar; Praveen Singh; Yasmeen Khan; Mary Krishna Ekka; Debojyoti Chakraborty; Souvik Maiti
Journal:  Nucleic Acids Res       Date:  2022-01-11       Impact factor: 16.971

Review 8.  Targeting RNA in mammalian systems with small molecules.

Authors:  Anita Donlic; Amanda E Hargrove
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-05-03       Impact factor: 9.957

9.  Why are Hoogsteen base pairs energetically disfavored in A-RNA compared to B-DNA?

Authors:  Atul Rangadurai; Huiqing Zhou; Dawn K Merriman; Nathalie Meiser; Bei Liu; Honglue Shi; Eric S Szymanski; Hashim M Al-Hashimi
Journal:  Nucleic Acids Res       Date:  2018-11-16       Impact factor: 16.971

Review 10.  Modulation of DNA structure formation using small molecules.

Authors:  Imee M A Del Mundo; Karen M Vasquez; Guliang Wang
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2019-09-03       Impact factor: 4.739

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