Literature DB >> 25878892

Crystal structure of (E)-N'-{[(1R,3R)-3-isopropyl-1-methyl-2-oxo-cyclo-pent-yl]methyl-idene}-4-methyl-benzene-sulfono-hydrazide.

David Tymann1, Dina Christina Dragon1, Christopher Golz1, Hans Preut1, Carsten Strohmann1, Martin Hiersemann1.   

Abstract

The title compound, C17H24N2O3S, was synthesized in order to determine the relative configuration of the corresponding β-keto aldehyde. In the U-shaped mol-ecule, the five-membered ring approximates an envelope with the methyl-ene atom adjacent to the quaternary C atom being the flap. The dihedral angles between the four nearly coplanar atoms of the five-membered ring and the flap and the aromatic ring are 38.8 (4) and 22.9 (2)°, respectively. The bond angles around the S atom are in the range 104.11 (16)-119.95 (16)°. In the crystal, mol-ecules are linked via N-H⋯O by hydrogen bonds, forming a chain along the a-axis direction.

Entities:  

Keywords:  benzene­sulfono­hydrazide; crystal structure; cyclo­penta­noids; hydrogen bonding; terpenoid-related building blocks

Year:  2015        PMID: 25878892      PMCID: PMC4384629          DOI: 10.1107/S2056989014026747

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the synthesis of terpenoid-related building blocks, in particular cyclo­penta­noids, see: Becker et al. (2013 ▸); Gille et al. (2011 ▸); Helmboldt et al. (2006 ▸); Nelson et al. (2011 ▸); Tymann et al.(2014 ▸). For a review on cyclo­penta­noids by ring contraction see: Silva (2002 ▸). For a solid–acid catalysed rearrangement of cyclic α,β-ep­oxy ketones see: Elings et al. (2000 ▸).

Experimental

Crystal data

C17H24N2O3S M = 336.44 Monoclinic, a = 6.6198 (8) Å b = 16.8318 (18) Å c = 7.9506 (9) Å β = 97.141 (11)° V = 879.00 (17) Å3 Z = 2 Mo Kα radiation μ = 0.20 mm−1 T = 173 K 0.23 × 0.10 × 0.03 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis CCD; Oxford Diffraction, 2008 ▸) T min = 0.98, T max = 1.00 6620 measured reflections 3684 independent reflections 3185 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.091 S = 1.01 3684 reflections 216 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.29 e Å−3 Absolute structure: Flack x determined using 1307 quotients [(I +)−(I −)]/[(I +)+(I −)] (Parsons & Flack,2004 ▸) Absolute structure parameter: 0.02 (5)

Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▸); cell refinement: CrysAlis CCD (Oxford Diffraction, 2008 ▸); data reduction: CrysAlis RED (Oxford Diffraction, 2008 ▸); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▸); molecular graphics: SHELXTL-Plus (Sheldrick, 2008 ▸); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008 ▸) and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) I, 2864. DOI: 10.1107/S2056989014026747/tk5349sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989014026747/tk5349Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989014026747/tk5349Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989014026747/tk5349fig1.tif The mol­ecular structure of the title compound, showing the labelling of all non-H atoms. Displacement ellipsoids are shown at the 30% probability level. CCDC reference: 1037859 Additional supporting information: crystallographic information; 3D view; checkCIF report
C17H24N2O3SZ = 2
Mr = 336.44F(000) = 360
Monoclinic, P21Dx = 1.271 Mg m3
a = 6.6198 (8) ÅMo Kα radiation, λ = 0.71073 Å
b = 16.8318 (18) ŵ = 0.20 mm1
c = 7.9506 (9) ÅT = 173 K
β = 97.141 (11)°Plate, colourless
V = 879.00 (17) Å30.23 × 0.10 × 0.03 mm
Oxford Diffraction Xcalibur Sapphire3 diffractometer3684 independent reflections
Radiation source: Enhance (Mo) X-ray Source3185 reflections with I > 2σ(I)
Detector resolution: 16.0560 pixels mm-1Rint = 0.032
phi and ω scansθmax = 27.0°, θmin = 2.4°
Absorption correction: multi-scan (CrysAlis CCD; Oxford Diffraction, 2008)h = −7→8
Tmin = 0.98, Tmax = 1.00k = −21→21
6620 measured reflectionsl = −10→9
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.044H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.091w = 1/[σ2(Fo2) + (0.0406P)2] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
3684 reflectionsΔρmax = 0.21 e Å3
216 parametersΔρmin = −0.29 e Å3
1 restraintAbsolute structure: Flack x determined using 1307 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons & Flack,2004)
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.02 (5)
Experimental. Absorption correction: CrysAlis PRO, Agilent Technologies, Version 1.171.36.24 (release 03–12-2012 CrysAlis171. NET) (compiled Dec 3 2012,18:21:49) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR andgoodness of fit S are based on F2, conventional R-factors R are basedon F, with F set to zero for negative F2. The threshold expression ofF2 > σ(F2) is used only for calculating R-factors(gt) etc. and isnot relevant to the choice of reflections for refinement. R-factors basedon F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S0.09218 (13)0.45682 (4)0.12604 (10)0.0211 (2)
O10.2056 (4)0.41202 (15)0.0179 (3)0.0301 (7)
O2−0.1089 (4)0.43231 (14)0.1507 (3)0.0328 (7)
O30.7126 (4)0.64917 (14)0.0645 (3)0.0263 (6)
N10.0612 (5)0.54744 (16)0.0481 (4)0.0201 (7)
N20.2410 (4)0.59285 (16)0.0665 (4)0.0190 (6)
C10.6011 (7)0.4966 (3)0.8060 (5)0.0363 (10)
H1A0.61210.55310.83470.054*
H1B0.73740.47460.80120.054*
H1C0.53580.46840.89260.054*
C20.4754 (6)0.4867 (2)0.6364 (5)0.0233 (8)
C40.4451 (5)0.4458 (2)0.3415 (4)0.0209 (8)
H40.50480.42490.24830.025*
C30.5595 (5)0.4551 (2)0.4991 (4)0.0233 (7)
H30.69860.43960.51330.028*
C50.2427 (5)0.46758 (19)0.3241 (4)0.0185 (7)
C60.1547 (6)0.4995 (2)0.4585 (5)0.0251 (8)
H60.01570.51510.44350.030*
C70.2701 (6)0.5084 (2)0.6137 (5)0.0277 (9)
H70.20950.52950.70630.033*
C80.2181 (5)0.66745 (19)0.0519 (4)0.0190 (7)
H80.08480.68890.02860.023*
C90.3979 (6)0.7225 (2)0.0708 (5)0.0206 (8)
C100.5880 (5)0.67705 (19)0.1474 (5)0.0199 (8)
C110.6049 (6)0.6771 (2)0.3399 (5)0.0229 (8)
H110.57660.62230.37940.027*
C120.8215 (6)0.7019 (2)0.4184 (5)0.0260 (9)
H120.92040.66890.36330.031*
C130.8553 (7)0.6835 (3)0.6095 (5)0.0462 (12)
H13A0.99660.69540.65440.069*
H13B0.82750.62710.62760.069*
H13C0.76330.71610.66810.069*
C140.8694 (6)0.7886 (2)0.3864 (5)0.0331 (10)
H14A0.77450.82270.43850.050*
H14B0.85550.79860.26410.050*
H14C1.00910.80050.43610.050*
C150.4298 (6)0.7325 (2)0.3774 (5)0.0283 (9)
H15A0.31130.70120.40400.034*
H15B0.47470.76770.47470.034*
C160.3749 (6)0.7811 (2)0.2166 (5)0.0282 (9)
H16A0.46830.82680.21320.034*
H16B0.23340.80110.20950.034*
C170.4217 (6)0.7612 (2)−0.0986 (5)0.0296 (10)
H17A0.44030.7200−0.18230.044*
H17B0.54060.7964−0.08530.044*
H17C0.29940.7923−0.13720.044*
H1N−0.051 (6)0.572 (2)0.079 (5)0.027 (11)*
U11U22U33U12U13U23
S0.0204 (5)0.0192 (4)0.0219 (4)−0.0035 (4)−0.0047 (3)0.0012 (4)
O10.0387 (18)0.0257 (13)0.0233 (14)0.0052 (12)−0.0065 (13)−0.0048 (11)
O20.0232 (16)0.0337 (15)0.0382 (16)−0.0125 (11)−0.0090 (12)0.0108 (12)
O30.0152 (14)0.0305 (14)0.0335 (15)0.0027 (11)0.0039 (12)−0.0092 (12)
N10.0120 (16)0.0218 (16)0.0252 (17)−0.0016 (12)−0.0024 (13)0.0021 (13)
N20.0129 (16)0.0229 (15)0.0209 (16)−0.0022 (12)0.0005 (12)0.0003 (12)
C10.046 (3)0.032 (2)0.027 (2)−0.004 (2)−0.009 (2)−0.0023 (18)
C20.029 (2)0.0184 (18)0.021 (2)−0.0061 (15)−0.0019 (17)0.0027 (14)
C40.0215 (19)0.0194 (19)0.0217 (17)0.0011 (16)0.0023 (14)0.0007 (15)
C30.0167 (17)0.0217 (16)0.0296 (18)0.0004 (17)−0.0053 (14)0.0021 (19)
C50.0200 (18)0.0157 (18)0.0188 (16)−0.0015 (14)−0.0018 (14)0.0005 (14)
C60.020 (2)0.0289 (19)0.026 (2)0.0013 (16)0.0034 (17)0.0025 (16)
C70.034 (2)0.028 (2)0.021 (2)0.0013 (17)0.0071 (18)−0.0025 (16)
C80.0119 (18)0.0218 (18)0.0229 (18)0.0016 (14)0.0008 (14)−0.0003 (15)
C90.0154 (19)0.0183 (18)0.029 (2)−0.0004 (14)0.0039 (16)0.0001 (15)
C100.014 (2)0.0154 (17)0.031 (2)−0.0055 (14)0.0051 (16)−0.0030 (15)
C110.019 (2)0.0229 (19)0.027 (2)−0.0016 (15)0.0032 (16)0.0008 (16)
C120.017 (2)0.035 (2)0.026 (2)0.0014 (15)0.0024 (17)−0.0061 (17)
C130.037 (3)0.067 (3)0.034 (3)−0.001 (2)0.000 (2)−0.002 (2)
C140.021 (2)0.038 (2)0.041 (2)−0.0060 (17)0.0044 (19)−0.0082 (19)
C150.021 (2)0.035 (2)0.030 (2)−0.0016 (17)0.0063 (17)−0.0097 (18)
C160.020 (2)0.0221 (18)0.043 (2)0.0017 (15)0.0068 (18)−0.0071 (17)
C170.024 (2)0.028 (2)0.037 (2)0.0000 (16)0.0047 (19)0.0094 (17)
S—O11.426 (3)C9—C171.522 (5)
S—O21.431 (3)C9—C101.533 (5)
S—N11.649 (3)C9—C161.544 (5)
S—C51.765 (3)C10—C111.520 (5)
O3—C101.213 (4)C11—C151.546 (5)
N1—N21.407 (4)C11—C121.548 (5)
N1—H1N0.91 (4)C11—H111.0000
N2—C81.268 (4)C12—C141.522 (6)
C1—C21.503 (5)C12—C131.539 (5)
C1—H1A0.9800C12—H121.0000
C1—H1B0.9800C13—H13A0.9800
C1—H1C0.9800C13—H13B0.9800
C2—C31.391 (5)C13—H13C0.9800
C2—C71.398 (5)C14—H14A0.9800
C4—C51.380 (5)C14—H14B0.9800
C4—C31.390 (5)C14—H14C0.9800
C4—H40.9500C15—C161.523 (6)
C3—H30.9500C15—H15A0.9900
C5—C61.387 (5)C15—H15B0.9900
C6—C71.376 (5)C16—H16A0.9900
C6—H60.9500C16—H16B0.9900
C7—H70.9500C17—H17A0.9800
C8—C91.501 (5)C17—H17B0.9800
C8—H80.9500C17—H17C0.9800
O1—S—O2119.95 (16)O3—C10—C9123.9 (3)
O1—S—N1108.22 (16)C11—C10—C9110.7 (3)
O2—S—N1104.11 (16)C10—C11—C15103.4 (3)
O1—S—C5108.13 (16)C10—C11—C12110.8 (3)
O2—S—C5109.82 (16)C15—C11—C12116.0 (3)
N1—S—C5105.67 (15)C10—C11—H11108.8
N2—N1—S113.5 (2)C15—C11—H11108.8
N2—N1—H1N116 (2)C12—C11—H11108.8
S—N1—H1N113 (2)C14—C12—C13110.5 (3)
C8—N2—N1116.0 (3)C14—C12—C11113.1 (3)
C2—C1—H1A109.5C13—C12—C11110.9 (3)
C2—C1—H1B109.5C14—C12—H12107.3
H1A—C1—H1B109.5C13—C12—H12107.3
C2—C1—H1C109.5C11—C12—H12107.3
H1A—C1—H1C109.5C12—C13—H13A109.5
H1B—C1—H1C109.5C12—C13—H13B109.5
C3—C2—C7118.4 (3)H13A—C13—H13B109.5
C3—C2—C1121.0 (4)C12—C13—H13C109.5
C7—C2—C1120.6 (4)H13A—C13—H13C109.5
C5—C4—C3118.3 (3)H13B—C13—H13C109.5
C5—C4—H4120.8C12—C14—H14A109.5
C3—C4—H4120.8C12—C14—H14B109.5
C4—C3—C2121.6 (3)H14A—C14—H14B109.5
C4—C3—H3119.2C12—C14—H14C109.5
C2—C3—H3119.2H14A—C14—H14C109.5
C4—C5—C6121.4 (3)H14B—C14—H14C109.5
C4—C5—S119.7 (3)C16—C15—C11105.5 (3)
C6—C5—S118.8 (3)C16—C15—H15A110.6
C7—C6—C5119.5 (3)C11—C15—H15A110.6
C7—C6—H6120.2C16—C15—H15B110.6
C5—C6—H6120.2C11—C15—H15B110.6
C6—C7—C2120.7 (3)H15A—C15—H15B108.8
C6—C7—H7119.7C15—C16—C9104.6 (3)
C2—C7—H7119.7C15—C16—H16A110.8
N2—C8—C9121.2 (3)C9—C16—H16A110.8
N2—C8—H8119.4C15—C16—H16B110.8
C9—C8—H8119.4C9—C16—H16B110.8
C8—C9—C17110.1 (3)H16A—C16—H16B108.9
C8—C9—C10109.5 (3)C9—C17—H17A109.5
C17—C9—C10113.3 (3)C9—C17—H17B109.5
C8—C9—C16108.5 (3)H17A—C17—H17B109.5
C17—C9—C16114.9 (3)C9—C17—H17C109.5
C10—C9—C16100.0 (3)H17A—C17—H17C109.5
O3—C10—C11125.3 (3)H17B—C17—H17C109.5
O1—S—N1—N2−71.4 (3)N2—C8—C9—C10−13.1 (5)
O2—S—N1—N2159.9 (2)N2—C8—C9—C16−121.3 (3)
C5—S—N1—N244.2 (3)C8—C9—C10—O397.8 (4)
S—N1—N2—C8−161.8 (3)C17—C9—C10—O3−25.6 (5)
C5—C4—C3—C2−0.9 (5)C16—C9—C10—O3−148.4 (3)
C7—C2—C3—C40.7 (5)C8—C9—C10—C11−86.2 (4)
C1—C2—C3—C4−179.9 (3)C17—C9—C10—C11150.5 (3)
C3—C4—C5—C61.2 (5)C16—C9—C10—C1127.7 (4)
C3—C4—C5—S179.9 (3)O3—C10—C11—C15169.9 (3)
O1—S—C5—C410.2 (3)C9—C10—C11—C15−6.1 (4)
O2—S—C5—C4142.7 (3)O3—C10—C11—C1245.0 (5)
N1—S—C5—C4−105.5 (3)C9—C10—C11—C12−131.0 (3)
O1—S—C5—C6−171.1 (3)C10—C11—C12—C1468.4 (4)
O2—S—C5—C6−38.5 (3)C15—C11—C12—C14−49.0 (4)
N1—S—C5—C673.2 (3)C10—C11—C12—C13−166.7 (3)
C4—C5—C6—C7−1.2 (5)C15—C11—C12—C1375.8 (4)
S—C5—C6—C7−179.9 (3)C10—C11—C15—C16−18.9 (4)
C5—C6—C7—C20.9 (6)C12—C11—C15—C16102.6 (4)
C3—C2—C7—C6−0.7 (5)C11—C15—C16—C937.0 (4)
C1—C2—C7—C6179.9 (3)C8—C9—C16—C1575.9 (4)
N1—N2—C8—C9179.3 (3)C17—C9—C16—C15−160.4 (3)
N2—C8—C9—C17112.1 (4)C10—C9—C16—C15−38.7 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O3i0.91 (4)2.03 (4)2.889 (4)158 (3)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H1NO3i 0.91(4)2.03(4)2.889(4)158(3)

Symmetry code: (i) .

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