Literature DB >> 25878881

Crystal structure of 4-{(E)-[2-(pyridin-4-ylcarbon-yl)hydrazin-1-yl-idene]meth-yl}phenyl acetate monohydrate.

Riya Datta1, V Ramya1, M Sithambaresan2, M R Prathapachandra Kurup3.   

Abstract

The asymmetric unit of the title compound, C15H13N3O3·H2O, comprises a 4-{(E)-[2-(pyridin-4-ylcarbon-yl)hydrazinyl-idene]meth-yl}phenyl acetate mol-ecule and a solvent water mol-ecule linked by O-H⋯O and O-H⋯N hydrogen bonds from the water mol-ecule and a C-H⋯O contact from the organic mol-ecule. The compound adopts an E conformation with respect to the azomethine bond and the dihedral angle between the pyridine and benzene rings is 21.90 (7)°. The azomethine bond [1.275 (2) Å] distance is very close to the formal C=N bond length, which confirms the azomethine bond formation. An extensive set of O-H⋯O, O-H⋯N, N-H⋯O and C-H⋯O hydrogen bonds builds a two-dimensional network progressing along the c axis.

Entities:  

Keywords:  aroyl hydrazone; crystal structure; hydrazone; hydrogen bonding

Year:  2015        PMID: 25878881      PMCID: PMC4384571          DOI: 10.1107/S2056989014027819

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For biological applications of hydrazone derivatives, see: Sreeja et al. (2004 ▸); Prasanna & Kumar (2013 ▸). For the synthesis of related compounds, see: Joseph et al. (2013 ▸); Thilagavathi et al. (2010 ▸). For the anti­cancer activity of hydrazones against cervical cancer, see: Nair et al. (2014 ▸).

Experimental

Crystal data

C15H13N3O3·H2O M = 301.30 Monoclinic, a = 17.3297 (15) Å b = 7.3058 (7) Å c = 12.4632 (10) Å β = 111.034 (3)° V = 1472.8 (2) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.50 × 0.45 × 0.40 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▸) T min = 0.951, T max = 0.961 8648 measured reflections 2614 independent reflections 2153 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.113 S = 0.94 2614 reflections 213 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.17 e Å−3

Data collection: APEX2 (Bruker, 2004 ▸); cell refinement: APEX2 and SAINT (Bruker, 2004 ▸); data reduction: SAINT and XPREP (Bruker, 2004 ▸); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and DIAMOND (Brandenburg, 2010 ▸); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989014027819/sj5434sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989014027819/sj5434Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989014027819/sj5434Isup3.cml Click here for additional data file. ORTEP . DOI: 10.1107/S2056989014027819/sj5434fig1.tif An ORTEP view of the compound, with 50% probability displacement ellipsoids for the non-H atoms. Click here for additional data file. 15 13 3 3 2 . DOI: 10.1107/S2056989014027819/sj5434fig2.tif Graphical representation showing hydrogen bonding inter­actions in the crystal structure of [C15H13N3O3]·(H2O). Click here for additional data file. c . DOI: 10.1107/S2056989014027819/sj5434fig3.tif The hydrogen bonding inter­actions build a double layer progressing along the c axis in the title compound. Click here for additional data file. a . DOI: 10.1107/S2056989014027819/sj5434fig4.tif A view of the overall crystal packing along the a axis. CCDC reference: 1040455 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H13N3O3·H2OF(000) = 632
Mr = 301.30Dx = 1.359 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 17.3297 (15) ÅCell parameters from 4335 reflections
b = 7.3058 (7) Åθ = 3.1–28.1°
c = 12.4632 (10) ŵ = 0.10 mm1
β = 111.034 (3)°T = 296 K
V = 1472.8 (2) Å3Block, colorless
Z = 40.50 × 0.45 × 0.40 mm
Bruker APEXII CCD diffractometer2614 independent reflections
Radiation source: fine-focus sealed tube2153 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
ω and φ scansθmax = 25.1°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −20→15
Tmin = 0.951, Tmax = 0.961k = −8→8
8648 measured reflectionsl = −11→14
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.037w = 1/[σ2(Fo2) + (0.0674P)2 + 0.4633P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.113(Δ/σ)max < 0.001
S = 0.94Δρmax = 0.21 e Å3
2614 reflectionsΔρmin = −0.17 e Å3
213 parametersExtinction correction: SHELXL2014 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
4 restraintsExtinction coefficient: 0.024 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.16188 (10)0.0685 (2)0.93233 (14)0.0400 (4)
H10.20960.01250.98170.048*
C20.08732 (10)0.0473 (2)0.94865 (14)0.0427 (4)
H20.0868−0.02311.01050.051*
C30.01996 (10)0.2228 (3)0.79347 (15)0.0476 (4)
H3−0.02870.27630.74490.057*
C40.09113 (10)0.2527 (2)0.77045 (14)0.0423 (4)
H40.08990.32450.70820.051*
C50.16422 (9)0.1743 (2)0.84140 (12)0.0340 (4)
C60.24113 (9)0.2125 (2)0.81590 (13)0.0369 (4)
C70.45140 (9)0.2232 (2)0.97566 (13)0.0367 (4)
H70.44830.17541.04310.044*
C80.53158 (9)0.2825 (2)0.97427 (13)0.0340 (4)
C90.54021 (9)0.3707 (2)0.87968 (13)0.0380 (4)
H90.49410.38870.81340.046*
C100.61707 (10)0.4314 (2)0.88411 (13)0.0388 (4)
H100.62290.49150.82160.047*
C110.68496 (9)0.4011 (2)0.98292 (14)0.0364 (4)
C120.67832 (9)0.3173 (2)1.07787 (13)0.0397 (4)
H120.72470.30001.14400.048*
C130.60111 (10)0.2590 (2)1.07295 (14)0.0395 (4)
H130.59570.20301.13690.047*
C140.80143 (9)0.3873 (2)0.92676 (13)0.0367 (4)
C150.88679 (10)0.4588 (3)0.95589 (16)0.0483 (4)
H15A0.91270.39930.90890.072*
H15B0.91810.43511.03540.072*
H15C0.88470.58840.94210.072*
N10.01652 (8)0.1220 (2)0.88093 (12)0.0455 (4)
N20.31362 (7)0.18494 (18)0.90293 (11)0.0358 (3)
N30.38562 (8)0.23535 (18)0.88687 (11)0.0369 (3)
O10.23649 (7)0.2689 (2)0.72122 (10)0.0589 (4)
O1S0.35113 (8)0.4455 (2)0.64055 (10)0.0480 (3)
O20.76382 (7)0.46558 (16)0.99337 (10)0.0446 (3)
O30.76890 (8)0.27267 (19)0.85709 (12)0.0598 (4)
H1S0.3278 (13)0.387 (3)0.6800 (18)0.080 (7)*
H2S0.3334 (15)0.554 (2)0.644 (2)0.094 (9)*
H2'0.3186 (11)0.148 (2)0.9725 (10)0.049 (5)*
U11U22U33U12U13U23
C10.0310 (8)0.0445 (10)0.0443 (9)−0.0027 (7)0.0131 (7)0.0066 (7)
C20.0399 (9)0.0451 (10)0.0471 (9)−0.0080 (8)0.0205 (7)0.0024 (7)
C30.0328 (9)0.0593 (12)0.0497 (10)0.0064 (8)0.0138 (7)0.0032 (8)
C40.0376 (9)0.0498 (10)0.0412 (8)0.0021 (8)0.0162 (7)0.0055 (7)
C50.0308 (8)0.0363 (9)0.0357 (8)−0.0045 (7)0.0132 (6)−0.0039 (6)
C60.0343 (8)0.0403 (9)0.0385 (8)−0.0059 (7)0.0158 (7)0.0003 (7)
C70.0347 (9)0.0365 (9)0.0435 (9)−0.0015 (7)0.0199 (7)0.0004 (7)
C80.0303 (8)0.0330 (8)0.0419 (8)0.0002 (6)0.0169 (6)−0.0039 (6)
C90.0317 (8)0.0445 (9)0.0373 (8)−0.0010 (7)0.0118 (6)−0.0013 (7)
C100.0391 (9)0.0441 (9)0.0379 (8)−0.0048 (7)0.0196 (7)−0.0012 (7)
C110.0304 (8)0.0386 (9)0.0443 (8)−0.0071 (7)0.0184 (7)−0.0121 (7)
C120.0315 (8)0.0465 (10)0.0395 (8)0.0005 (7)0.0106 (7)−0.0013 (7)
C130.0388 (9)0.0426 (9)0.0400 (8)−0.0003 (7)0.0176 (7)0.0040 (7)
C140.0351 (8)0.0394 (9)0.0378 (8)0.0001 (7)0.0157 (7)−0.0018 (7)
C150.0375 (9)0.0532 (11)0.0600 (10)−0.0045 (8)0.0246 (8)−0.0013 (8)
N10.0352 (8)0.0526 (9)0.0534 (8)−0.0053 (7)0.0216 (7)−0.0049 (7)
N20.0286 (7)0.0437 (8)0.0394 (7)−0.0049 (6)0.0174 (6)0.0019 (6)
N30.0305 (7)0.0402 (8)0.0455 (7)−0.0042 (6)0.0203 (6)−0.0011 (6)
O10.0413 (7)0.0937 (11)0.0431 (7)−0.0115 (7)0.0168 (5)0.0149 (7)
O1S0.0471 (7)0.0572 (9)0.0459 (7)0.0022 (6)0.0241 (6)0.0071 (6)
O20.0342 (6)0.0543 (7)0.0512 (7)−0.0151 (5)0.0223 (5)−0.0191 (5)
O30.0482 (8)0.0701 (9)0.0660 (8)−0.0102 (7)0.0266 (6)−0.0306 (7)
C1—C21.387 (2)C9—H90.9300
C1—C51.384 (2)C10—C111.382 (2)
C1—H10.9300C10—H100.9300
C2—N11.331 (2)C11—C121.374 (2)
C2—H20.9300C11—O21.4066 (18)
C3—N11.334 (2)C12—C131.384 (2)
C3—C41.380 (2)C12—H120.9300
C3—H30.9300C13—H130.9300
C4—C51.382 (2)C14—O31.1921 (19)
C4—H40.9300C14—O21.3527 (18)
C5—C61.503 (2)C14—C151.486 (2)
C6—O11.2252 (19)C15—H15A0.9600
C6—N21.348 (2)C15—H15B0.9600
C7—N31.275 (2)C15—H15C0.9600
C7—C81.462 (2)N2—N31.3827 (17)
C7—H70.9300N2—H2'0.883 (9)
C8—C131.389 (2)O1S—H1S0.857 (16)
C8—C91.398 (2)O1S—H2S0.860 (16)
C9—C101.386 (2)
C2—C1—C5119.01 (15)C11—C10—H10120.6
C2—C1—H1120.5C9—C10—H10120.6
C5—C1—H1120.5C12—C11—C10122.10 (14)
N1—C2—C1123.81 (15)C12—C11—O2116.65 (14)
N1—C2—H2118.1C10—C11—O2121.14 (14)
C1—C2—H2118.1C11—C12—C13118.52 (14)
N1—C3—C4124.23 (16)C11—C12—H12120.7
N1—C3—H3117.9C13—C12—H12120.7
C4—C3—H3117.9C12—C13—C8121.23 (15)
C3—C4—C5118.91 (15)C12—C13—H13119.4
C3—C4—H4120.5C8—C13—H13119.4
C5—C4—H4120.5O3—C14—O2122.55 (14)
C4—C5—C1117.75 (14)O3—C14—C15126.45 (15)
C4—C5—C6117.81 (14)O2—C14—C15110.97 (14)
C1—C5—C6124.43 (14)C14—C15—H15A109.5
O1—C6—N2123.04 (14)C14—C15—H15B109.5
O1—C6—C5120.63 (14)H15A—C15—H15B109.5
N2—C6—C5116.31 (13)C14—C15—H15C109.5
N3—C7—C8121.78 (14)H15A—C15—H15C109.5
N3—C7—H7119.1H15B—C15—H15C109.5
C8—C7—H7119.1C2—N1—C3116.29 (14)
C13—C8—C9118.84 (14)C6—N2—N3118.20 (12)
C13—C8—C7118.62 (14)C6—N2—H2'124.8 (11)
C9—C8—C7122.45 (14)N3—N2—H2'116.7 (11)
C10—C9—C8120.40 (14)C7—N3—N2115.33 (13)
C10—C9—H9119.8H1S—O1S—H2S100.4 (19)
C8—C9—H9119.8C14—O2—C11117.88 (12)
C11—C10—C9118.88 (14)
C5—C1—C2—N10.6 (3)C9—C10—C11—O2−177.75 (14)
N1—C3—C4—C50.1 (3)C10—C11—C12—C131.1 (2)
C3—C4—C5—C10.2 (2)O2—C11—C12—C13177.22 (14)
C3—C4—C5—C6−178.71 (15)C11—C12—C13—C80.6 (2)
C2—C1—C5—C4−0.5 (2)C9—C8—C13—C12−1.5 (2)
C2—C1—C5—C6178.31 (14)C7—C8—C13—C12−178.10 (15)
C4—C5—C6—O1−18.5 (2)C1—C2—N1—C3−0.3 (2)
C1—C5—C6—O1162.62 (17)C4—C3—N1—C2−0.1 (3)
C4—C5—C6—N2160.04 (15)O1—C6—N2—N34.8 (2)
C1—C5—C6—N2−18.8 (2)C5—C6—N2—N3−173.74 (12)
N3—C7—C8—C13−177.64 (15)C8—C7—N3—N2−176.06 (13)
N3—C7—C8—C95.9 (2)C6—N2—N3—C7173.26 (14)
C13—C8—C9—C100.8 (2)O3—C14—O2—C113.2 (2)
C7—C8—C9—C10177.24 (15)C15—C14—O2—C11−174.82 (14)
C8—C9—C10—C110.8 (2)C12—C11—O2—C14115.34 (16)
C9—C10—C11—C12−1.8 (2)C10—C11—O2—C14−68.5 (2)
D—H···AD—HH···AD···AD—H···A
C1—H1···O1Si0.932.563.375 (2)147
C7—H7···O1Si0.932.563.3655 (19)145
C12—H12···O3i0.932.543.329 (2)143
N2—H2′···O1Si0.88 (1)2.08 (1)2.9529 (18)170 (2)
O1S—H1S···N30.86 (2)2.65 (2)3.2897 (18)133 (2)
O1S—H1S···O10.86 (2)2.02 (2)2.8382 (17)159 (2)
O1S—H2S···O3ii0.86 (2)2.38 (2)3.1754 (19)154 (2)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C1H1O1S i 0.932.563.375(2)147
C7H7O1S i 0.932.563.3655(19)145
C12H12O3i 0.932.543.329(2)143
N2H2O1S i 0.88(1)2.08(1)2.9529(18)170(2)
O1SH1SN30.86(2)2.65(2)3.2897(18)133(2)
O1SH1SO10.86(2)2.02(2)2.8382(17)159(2)
O1SH2SO3ii 0.86(2)2.38(2)3.1754(19)154(2)

Symmetry codes: (i) ; (ii) .

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